Per-sample immunoglobulin germline inference from B cell receptor deep sequencing data.

by Duncan K Ralph, Frederick A Matsen
Published 2019-07-01

Using B cell receptor lineage structures to predict affinity.

by Duncan K Ralph, Frederick A Matsen
Published 2020-11-01

Consistency of VDJ Rearrangement and Substitution Parameters Enables Accurate B Cell Receptor Sequence Annotation.

by Duncan K Ralph, Frederick A Matsen
Published 2016-01-01

Likelihood-Based Inference of B Cell Clonal Families.

by Duncan K Ralph, Frederick A Matsen
Published 2016-10-01

A Bayesian phylogenetic hidden Markov model for B cell receptor sequence analysis.

by Amrit Dhar, Duncan K Ralph, Vladimir N Minin, Frederick A Matsen
Published 2020-08-01

Functional development of a V3/glycan-specific broadly neutralizing antibody isolated from a case of HIV superinfection

by Mackenzie M Shipley, Vidya Mangala Prasad, Laura E Doepker, Adam Dingens, Duncan K Ralph, Elias Harkins, Amrit Dhar, Dana Arenz, Vrasha Chohan, Haidyn Weight, Kishor Mandaliya, Jesse D Bloom, Frederick A Matsen IV, Kelly K Lee, Julie M Overbaugh
Published 2021-07-01

Development of antibody-dependent cell cytotoxicity function in HIV-1 antibodies

by Laura E Doepker, Sonja Danon, Elias Harkins, Duncan K Ralph, Zak Yaffe, Meghan E Garrett, Amrit Dhar, Cassia Wagner, Megan M Stumpf, Dana Arenz, James A Williams, Walter Jaoko, Kishor Mandaliya, Kelly K Lee, Frederick A Matsen IV, Julie M Overbaugh
Published 2021-01-01

AIRR Community Standardized Representations for Annotated Immune Repertoires

by Jason Anthony Vander Heiden, Susanna Marquez, Nishanth Marthandan, Syed Ahmad Chan Bukhari, Christian E. Busse, Brian Corrie, Uri Hershberg, Uri Hershberg, Uri Hershberg, Steven H. Kleinstein, Steven H. Kleinstein, Frederick A. Matsen IV, Duncan K. Ralph, Aaron M. Rosenfeld, Chaim A. Schramm, The AIRR Community, Scott Christley, Uri Laserson
Published 2018-09-01