Metabolic constraint-based refinement of transcriptional regulatory networks.

by Sriram Chandrasekaran, Nathan D Price
Published 2013-01-01

Comparative Analysis of Yeast Metabolic Network Models Highlights Progress, Opportunities for Metabolic Reconstruction.

by Benjamin D Heavner, Nathan D Price
Published 2015-11-01

Genetic co-occurrence network across sequenced microbes.

by Pan-Jun Kim, Nathan D Price
Published 2011-12-01

Genome-scale consequences of cofactor balancing in engineered pentose utilization pathways in Saccharomyces cerevisiae.

by Amit Ghosh, Huimin Zhao, Nathan D Price
Published 2011-01-01

The limits of de novo DNA motif discovery.

by David Simcha, Nathan D Price, Donald Geman
Published 2012-01-01

iREAD: a tool for intron retention detection from RNA-seq data

by Hong-Dong Li, Cory C. Funk, Nathan D. Price
Published 2020-02-01

Transceivers as a Resource: Scheduling Time and Bandwidth in Software-Defined Radio

by Nathan D. Price, Maciej J. Zawodniok, Ivan G. Guardiola
Published 2020-01-01

Identifying tightly regulated and variably expressed networks by Differential Rank Conservation (DIRAC).

by James A Eddy, Leroy Hood, Nathan D Price, Donald Geman
Published 2010-05-01

Transcriptional analysis of aggressiveness and heterogeneity across grades of astrocytomas.

by Chunjing Wang, Cory C Funk, James A Eddy, Nathan D Price
Published 2013-01-01

From taxonomy to metabolic output: what factors define gut microbiome health?

by Tomasz Wilmanski, Noa Rappaport, Christian Diener, Sean M. Gibbons, Nathan D. Price
Published 2021-01-01

Long-range periodic patterns in microbial genomes indicate significant multi-scale chromosomal organization.

by Timothy E Allen, Nathan D Price, Andrew R Joyce, Bernhard Ø Palsson
Published 2006-01-01

Measuring the effect of inter-study variability on estimating prediction error.

by Shuyi Ma, Jaeyun Sung, Andrew T Magis, Yuliang Wang, Donald Geman, Nathan D Price
Published 2014-01-01

Likelihood-based gene annotations for gap filling and quality assessment in genome-scale metabolic models.

by Matthew N Benedict, Michael B Mundy, Christopher S Henry, Nicholas Chia, Nathan D Price
Published 2014-10-01

Matrix formalism to describe functional states of transcriptional regulatory systems.

by Erwin P Gianchandani, Jason A Papin, Nathan D Price, Andrew R Joyce, Bernhard O Palsson
Published 2006-08-01

OptRAM: In-silico strain design via integrative regulatory-metabolic network modeling.

by Fangzhou Shen, Renliang Sun, Jie Yao, Jian Li, Qian Liu, Nathan D Price, Chenguang Liu, Zhuo Wang
Published 2019-03-01

Identifying Personalized Metabolic Signatures in Breast Cancer

by Priyanka Baloni, Wikum Dinalankara, John C. Earls, Theo A. Knijnenburg, Donald Geman, Luigi Marchionni, Nathan D. Price
Published 2021-12-01

MediaDB: a database of microbial growth conditions in defined media.

by Matthew A Richards, Victor Cassen, Benjamin D Heavner, Nassim E Ajami, Andrea Herrmann, Evangelos Simeonidis, Nathan D Price
Published 2014-01-01

Integrated Modeling of Gene Regulatory and Metabolic Networks in Mycobacterium tuberculosis.

by Shuyi Ma, Kyle J Minch, Tige R Rustad, Samuel Hobbs, Suk-Lin Zhou, David R Sherman, Nathan D Price
Published 2015-11-01

Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa

by Areejit Samal, James P. Craig, Samuel T. Coradetti, J. Philipp Benz, James A. Eddy, Nathan D. Price, N. Louise Glass
Published 2017-09-01

Health and disease markers correlate with gut microbiome composition across thousands of people

by Ohad Manor, Chengzhen L. Dai, Sergey A. Kornilov, Brett Smith, Nathan D. Price, Jennifer C. Lovejoy, Sean M. Gibbons, Andrew T. Magis
Published 2020-10-01