Evidence of conformational selection driving the formation of ligand binding sites in protein-protein interfaces.

by Tanggis Bohnuud, Dima Kozakov, Sandor Vajda
Published 2014-10-01

Protein docking by the underestimation of free energy funnels in the space of encounter complexes.

by Yang Shen, Ioannis Ch Paschalidis, Pirooz Vakili, Sandor Vajda
Published 2008-10-01

Conservation of binding properties in protein models

by Megan Egbert, Kathryn A. Porter, Usman Ghani, Sergei Kotelnikov, Thu Nguyen, Ryota Ashizawa, Dima Kozakov, Sandor Vajda
Published 2021-01-01

Improved cluster ranking in protein–protein docking using a regression approach

by Shahabeddin Sotudian, Israel T. Desta, Nasser Hashemi, Shahrooz Zarbafian, Dima Kozakov, Pirooz Vakili, Sandor Vajda, Ioannis Ch. Paschalidis
Published 2021-01-01

Encounter complexes and dimensionality reduction in protein–protein association

by Dima Kozakov, Keyong Li, David R Hall, Dmitri Beglov, Jiefu Zheng, Pirooz Vakili, Ora Schueler-Furman, Ioannis Ch Paschalidis, G Marius Clore, Sandor Vajda
Published 2014-04-01

A first-generation multi-functional cytokine for simultaneous optical tracking and tumor therapy.

by Shawn Hingtgen, Randa Kasmieh, Elizabeth Elbayly, Irina Nesterenko, Jose-Luiz Figueiredo, Rupesh Dash, Devanand Sarkar, David Hall, Dima Kozakov, Sandor Vajda, Paul B Fisher, Khalid Shah
Published 2012-01-01

Exploring protein hotspots by optimized fragment pharmacophores

by Dávid Bajusz, Warren S. Wade, Grzegorz Satała, Andrzej J. Bojarski, Janez Ilaš, Jessica Ebner, Florian Grebien, Henrietta Papp, Ferenc Jakab, Alice Douangamath, Daren Fearon, Frank von Delft, Marion Schuller, Ivan Ahel, Amanda Wakefield, Sándor Vajda, János Gerencsér, Péter Pallai, György M. Keserű
Published 2021-05-01