Predicting the evolution of sex on complex fitness landscapes.

by Dusan Misevic, Roger D Kouyos, Sebastian Bonhoeffer
Published 2009-09-01

Informed switching strongly decreases the prevalence of antibiotic resistance in hospital wards.

by Roger D Kouyos, Pia Abel Zur Wiesch, Sebastian Bonhoeffer
Published 2011-03-01

On being the right size: the impact of population size and stochastic effects on the evolution of drug resistance in hospitals and the community.

by Roger D Kouyos, Pia Abel Zur Wiesch, Sebastian Bonhoeffer
Published 2011-04-01

The role of recombination for the coevolutionary dynamics of HIV and the immune response.

by Rafal Mostowy, Roger D Kouyos, David Fouchet, Sebastian Bonhoeffer
Published 2011-02-01

Author Correction: Efficient microbial colony growth dynamics quantification with ColTapp, an automated image analysis application

by Julian Bär, Mathilde Boumasmoud, Roger D. Kouyos, Annelies S. Zinkernagel, Clément Vulin
Published 2021-03-01

The impact of HCV therapy in a high HIV-HCV prevalence population: A modeling study on people who inject drugs in Ho Chi Minh City, Vietnam.

by Ruthie B Birger, Thuy Le, Roger D Kouyos, Bryan T Grenfell, Timothy B Hallett
Published 2017-01-01

Similar impact of CD8+ T cell responses on early virus dynamics during SIV infections of rhesus macaques and sooty mangabeys.

by Roger D Kouyos, Shari N Gordon, Silvija I Staprans, Guido Silvestri, Roland R Regoes
Published 2010-08-01

An Integrated Approach to Identifying International Foodborne Norovirus Outbreaks

by Linda Verhoef, Roger D. Kouyos, Harry Vennema, Annelies Kroneman, Joukje Siebenga, Wilfrid van Pelt, Marion Koopmans
Published 2011-03-01

Drivers of HIV-1 drug resistance to non-nucleoside reverse-transcriptase inhibitors (NNRTIs) in nine southern African countries: a modelling study

by Julien Riou, Carole Dupont, Silvia Bertagnolio, Ravindra K. Gupta, Roger D. Kouyos, Matthias Egger, Christian L. Althaus
Published 2021-10-01

Bridging the gap between HIV epidemiology and antiretroviral resistance evolution: Modelling the spread of resistance in South Africa.

by Anthony Hauser, Katharina Kusejko, Leigh F Johnson, Gilles Wandeler, Julien Riou, Fardo Goldstein, Matthias Egger, Roger D Kouyos
Published 2019-06-01

Exploring the complexity of the HIV-1 fitness landscape.

by Roger D Kouyos, Gabriel E Leventhal, Trevor Hinkley, Mojgan Haddad, Jeannette M Whitcomb, Christos J Petropoulos, Sebastian Bonhoeffer
Published 2012-01-01

Impact of scaling up dolutegravir on antiretroviral resistance in South Africa: A modeling study.

by Anthony Hauser, Katharina Kusejko, Leigh F Johnson, Huldrych F Günthard, Julien Riou, Gilles Wandeler, Matthias Egger, Roger D Kouyos
Published 2020-12-01

Assessing the potential impact of transmission during prolonged viral shedding on the effect of lockdown relaxation on COVID-19.

by Burcu Tepekule, Anthony Hauser, Viacheslav N Kachalov, Sara Andresen, Thomas Scheier, Peter W Schreiber, Huldrych F Günthard, Roger D Kouyos
Published 2021-01-01

Estimating the fitness cost of escape from HLA presentation in HIV-1 protease and reverse transcriptase.

by Rafal Mostowy, Roger D Kouyos, Ilka Hoof, Trevor Hinkley, Mojgan Haddad, Jeannette M Whitcomb, Christos J Petropoulos, Can Keşmir, Sebastian Bonhoeffer
Published 2012-01-01

Quantifying Variation in Bacterial Reproductive Fitness: a High-Throughput Method

by Pascal M. Frey, Julian Baer, Judith Bergada-Pijuan, Conor Lawless, Philipp K. Bühler, Roger D. Kouyos, Katherine P. Lemon, Annelies S. Zinkernagel, Silvio D. Brugger
Published 2021-02-01

Identifying the drivers of multidrug-resistant Klebsiella pneumoniae at a European level.

by Viacheslav N Kachalov, Huyen Nguyen, Suraj Balakrishna, Luisa Salazar-Vizcaya, Rami Sommerstein, Stefan P Kuster, Anthony Hauser, Pia Abel Zur Wiesch, Eili Klein, Roger D Kouyos
Published 2021-01-01

Lower Broadly Neutralizing Antibody Responses in Female Versus Male HIV-1 Infected Injecting Drug Users

by Zelda EULER, Tom L. VAN DEN KERKHOF, Roger D. KOUYOS, Damien C. TULLY, Todd M. ALLEN, Alexandra TRKOLA, Rogier W. SANDERS, Hanneke SCHUITEMAKER, Marit J. VAN GILS
Published 2019-04-01

The TransFLUas influenza transmission study in acute healthcare - recruitment rates and protocol adherence in healthcare workers and inpatients

by Hila Schwarz, Jürg Böni, Roger D. Kouyos, Teja Turk, Edouard Battegay, Malcolm Kohler, Rouven Müller, Heidi Petry, Hugo Sax, Rainer Weber, Allison McGeer, Alexandra Trkola, Stefan P. Kuster
Published 2019-05-01

Diagnosis of latent tuberculosis infection is associated with reduced HIV viral load and lower risk for opportunistic infections in people living with HIV.

by Katharina Kusejko, Huldrych F Günthard, Gregory S Olson, Kyra Zens, Katharine Darling, Nina Khanna, Hansjakob Furrer, Pauline Vetter, Enos Bernasconi, Pietro Vernazza, Matthias Hoffmann, Roger D Kouyos, Johannes Nemeth, Swiss HIV Cohort Study
Published 2020-12-01

Modeling the measles paradox reveals the importance of cellular immunity in regulating viral clearance.

by Sinead E Morris, Andrew J Yates, Rik L de Swart, Rory D de Vries, Michael J Mina, Ashley N Nelson, Wen-Hsuan W Lin, Roger D Kouyos, Diane E Griffin, Bryan T Grenfell
Published 2018-12-01