Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes

by Robert A. Petit, Timothy D. Read
Published 2020-08-01

Staphylococcus aureus viewed from the perspective of 40,000+ genomes

by Robert A. Petit III, Timothy D. Read
Published 2018-07-01

Fine-scale differentiation between Bacillus anthracis and Bacillus cereus group signatures in metagenome shotgun data

by Robert A. Petit III, James M. Hogan, Matthew N. Ezewudo, Sandeep J. Joseph, Timothy D. Read
Published 2018-08-01

The single-species metagenome: subtyping Staphylococcus aureus core genome sequences from shotgun metagenomic data

by Sandeep J. Joseph, Ben Li, Robert A. Petit III, Zhaohui S. Qin, Lyndsey Darrow, Timothy D. Read
Published 2016-10-01

Genotypic and Phenotypic Diversity of Staphylococcus aureus Isolates from Cystic Fibrosis Patient Lung Infections and Their Interactions with Pseudomonas aeruginosa

by Eryn E. Bernardy, Robert A. Petit, Vishnu Raghuram, Ashley M. Alexander, Timothy D. Read, Joanna B. Goldberg
Published 2020-06-01

USA300 Staphylococcus aureus persists on multiple body sites following an infection

by Timothy D. Read, Robert A. Petit, Zachary Yin, Tuyaa Montgomery, Moira C. McNulty, Michael Z. David
Published 2018-12-01

Shiftwork, functional bowel symptoms, and the microbiome

by Ann E. Rogers, Yi-Juan Hu, Ye Yue, Emily F. Wissel, Robert A. Petit III, Simone Jarrett, Jennifer Christie, Timothy D. Read
Published 2021-05-01

Genomic analysis of variability in Delta-toxin levels between Staphylococcus aureus strains

by Michelle Su, James T. Lyles, Robert A. Petit III, Jessica Peterson, Michelle Hargita, Huaqiao Tang, Claudia Solis-Lemus, Cassandra L. Quave, Timothy D. Read
Published 2020-03-01

Erratum to: draft sequencing and assembly of the genome of the world’s largest fish, the whale shark: Rhincodon typus smith 1828

by Timothy D. Read, Robert A. Petit, Sandeep J. Joseph, Tauqeer Alam, M. Ryan Weil, Maida Ahmad, Ravila Bhimani, Jocelyn S. Vuong, Chad P. Haase, D. Harry Webb, Milton Tan, Alistair D.M. Dove
Published 2017-09-01

Draft sequencing and assembly of the genome of the world’s largest fish, the whale shark: Rhincodon typus Smith 1828

by Timothy D. Read, Robert A. Petit, Sandeep J. Joseph, Md. Tauqeer Alam, M. Ryan Weil, Maida Ahmad, Ravila Bhimani, Jocelyn S. Vuong, Chad P. Haase, D. Harry Webb, Milton Tan, Alistair D. M. Dove
Published 2017-07-01