Tree-based position weight matrix approach to model transcription factor binding site profiles.

by Yingtao Bi, Hyunsoo Kim, Ravi Gupta, Ramana V Davuluri
Published 2011-01-01

Identification of Genetic and Epigenetic Variants Associated with Breast Cancer Prognosis by Integrative Bioinformatics Analysis

by Arunima Shilpi, Yingtao Bi, Segun Jung, Samir K. Patra, Ramana V. Davuluri
Published 2017-01-01

Changes in gene expression associated with loss of function of the NSDHL sterol dehydrogenase in mouse embryonic fibroblasts

by David Cunningham, Daniel Swartzlander, Sandya Liyanarachchi, Ramana V. Davuluri, Gail E. Herman
Published 2005-06-01

Protein kinase A activation enhances β-catenin transcriptional activity through nuclear localization to PML bodies.

by Mei Zhang, Emilia Mahoney, Tao Zuo, Parmeet K Manchanda, Ramana V Davuluri, Lawrence S Kirschner
Published 2014-01-01

Transcriptional consequences of impaired immune cell responses induced by cystic fibrosis plasma characterized via dual RNA sequencing

by Justin E. Ideozu, Vittobai Rangaraj, Hiam Abdala-Valencia, Xi Zhang, Manoj Kandpal, Marc A. Sala, Ramana V. Davuluri, Hara Levy
Published 2019-05-01

Distinct mechanisms control genome recognition by p53 at its target genes linked to different cell fates

by Marina Farkas, Hideharu Hashimoto, Yingtao Bi, Ramana V. Davuluri, Lois Resnick-Silverman, James J. Manfredi, Erik W. Debler, Steven B. McMahon
Published 2021-01-01

Stabilization of HIF-1α and HIF-2α, up-regulation of MYCC and accumulation of stabilized p53 constitute hallmarks of CNS-PNET animal model.

by Sergey Malchenko, Simone Treiger Sredni, Yingtao Bi, Naira V Margaryan, Jerusha Boyineni, Indra Mohanam, Tadanori Tomita, Ramana V Davuluri, Marcelo B Soares
Published 2017-01-01

Orthogonal ubiquitin transfer identifies ubiquitination substrates under differential control by the two ubiquitin activating enzymes

by Xianpeng Liu, Bo Zhao, Limin Sun, Karan Bhuripanyo, Yiyang Wang, Yingtao Bi, Ramana V. Davuluri, Duc M. Duong, Dhaval Nanavati, Jun Yin, Hiroaki Kiyokawa
Published 2017-01-01

Aberrant DNA methylation of OLIG1, a novel prognostic factor in non-small cell lung cancer.

by Romulo M Brena, Carl Morrison, Sandya Liyanarachchi, David Jarjoura, Ramana V Davuluri, Gregory A Otterson, David Reisman, Selina Glaros, Laura J Rush, Christoph Plass
Published 2007-03-01

An Application of a Service-oriented System to Support ArrayAnnotation in Custom Chip Design for Epigenomic Analysis

by Joel H. Saltz, Tim H.-M. Huang, Greg Singer, Tahsin Kurc, Dustin Potter, Junghee Han, Ramana V. Davuluri, Scott Oster, Stephen Langella, Shannon Hastings, Sun Hao, Pearlly S. Yan
Published 2008-01-01

CpG island methylation in a mouse model of lymphoma is driven by the genetic configuration of tumor cells.

by Rene Opavsky, Shu-Huei Wang, Prashant Trikha, Aparna Raval, Yuan Huang, Yue-Zhong Wu, Benjamin Rodriguez, Benjamin Keller, Sandya Liyanarachchi, Guo Wei, Ramana V Davuluri, Michael Weinstein, Dean Felsher, Michael Ostrowski, Gustavo Leone, Christoph Plass
Published 2007-09-01

Aberrant Transforming Growth Factor β1 Signaling and SMAD4 Nuclear Translocation Confer Epigenetic Repression of ADAM19 in Ovarian Cancer

by Michael W.Y. Chan, Yi-Wen Huang, Corinna Hartman-Frey, Chieh-Ti Kuo, Daniel Deatherage, Huaxia Qin, Alfred S.L. Cheng, Pearlly S. Yan, Ramana V. Davuluri, Tim H.-M. Huang, Kenneth P. Nephew, Huey-Jen L. Lin
Published 2008-09-01

Immune landscapes associated with different glioblastoma molecular subtypes

by Maria Martinez-Lage, Timothy M. Lynch, Yingtao Bi, Carolina Cocito, Gregory P. Way, Sharmistha Pal, Josephine Haller, Rachel E. Yan, Amy Ziober, Aivi Nguyen, Manoj Kandpal, Donald M. O’Rourke, Jeffrey P. Greenfield, Casey S. Greene, Ramana V. Davuluri, Nadia Dahmane
Published 2019-11-01

Multivariate Analysis of Preoperative Magnetic Resonance Imaging Reveals Transcriptomic Classification of de novo Glioblastoma Patients

by Saima Rathore, Saima Rathore, Hamed Akbari, Hamed Akbari, Spyridon Bakas, Spyridon Bakas, Spyridon Bakas, Jared M. Pisapia, Jared M. Pisapia, Gaurav Shukla, Gaurav Shukla, Jeffrey D. Rudie, Xiao Da, Ramana V. Davuluri, Nadia Dahmane, Donald M. O'Rourke, Christos Davatzikos, Christos Davatzikos
Published 2019-12-01

Cancer-Associated IDH1 Promotes Growth and Resistance to Targeted Therapies in the Absence of Mutation

by Andrea E. Calvert, Alexandra Chalastanis, Yongfei Wu, Lisa A. Hurley, Fotini M. Kouri, Yingtao Bi, Maureen Kachman, Jasmine L. May, Elizabeth Bartom, Youjia Hua, Rama K. Mishra, Gary E. Schiltz, Oleksii Dubrovskyi, Andrew P. Mazar, Marcus E. Peter, Hongwu Zheng, C. David James, Charles F. Burant, Navdeep S. Chandel, Ramana V. Davuluri, Craig Horbinski, Alexander H. Stegh
Published 2017-05-01

Transcribed ultraconserved region 339 promotes carcinogenesis by modulating tumor suppressor microRNAs

by Ivan Vannini, Petra M. Wise, Kishore B. Challagundla, Meropi Plousiou, Mirco Raffini, Erika Bandini, Francesca Fanini, Giorgia Paliaga, Melissa Crawford, Manuela Ferracin, Cristina Ivan, Linda Fabris, Ramana V. Davuluri, Zhiyi Guo, Maria Angelica Cortez, Xinna Zhang, Lu Chen, Shuxing Zhang, Cecilia Fernandez-Cymering, Leng Han, Silvia Carloni, Samanta Salvi, Hui Ling, Mariam Murtadha, Paolo Neviani, Barbara J. Gitlitz, Ite A. Laird-Offringa, Patrick Nana-Sinkam, Massimo Negrini, Han Liang, Dino Amadori, Amelia Cimmino, George A. Calin, Muller Fabbri
Published 2017-11-01

Publisher Correction: Transcribed ultraconserved region 339 promotes carcinogenesis by modulating tumor suppressor microRNAs

by Ivan Vannini, Petra M. Wise, Kishore B. Challagundla, Meropi Plousiou, Mirco Raffini, Erika Bandini, Francesca Fanini, Giorgia Paliaga, Melissa Crawford, Manuela Ferracin, Cristina Ivan, Linda Fabris, Ramana V. Davuluri, Zhiyi Guo, Maria Angelica Cortez, Xinna Zhang, Lu Chen, Shuxing Zhang, Cecilia Fernandez-Cymering, Leng Han, Silvia Carloni, Samanta Salvi, Hui Ling, Mariam Murtadha, Paolo Neviani, Barbara J. Gitlitz, Ite A. Laird-Offringa, Patrick Nana-Sinkam, Massimo Negrini, Han Liang, Dino Amadori, Amelia Cimmino, George A. Calin, Muller Fabbri
Published 2018-01-01