Probabilistic modelling of chromatin code landscape reveals functional diversity of enhancer-like chromatin states

by Jian Zhou, Olga G. Troyanskaya
Published 2016-02-01

Global quantitative modeling of chromatin factor interactions.

by Jian Zhou, Olga G Troyanskaya
Published 2014-03-01

Chapter 2: Data-driven view of disease biology.

by Casey S Greene, Olga G Troyanskaya
Published 2012-01-01

Accurate quantification of functional analogy among close homologs.

by Maria D Chikina, Olga G Troyanskaya
Published 2011-02-01

Global prediction of tissue-specific gene expression and context-dependent gene networks in Caenorhabditis elegans.

by Maria D Chikina, Curtis Huttenhower, Coleen T Murphy, Olga G Troyanskaya
Published 2009-06-01

Simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway components.

by Christopher Y Park, David C Hess, Curtis Huttenhower, Olga G Troyanskaya
Published 2010-11-01

Coordinated concentration changes of transcripts and metabolites in Saccharomyces cerevisiae.

by Patrick H Bradley, Matthew J Brauer, Joshua D Rabinowitz, Olga G Troyanskaya
Published 2009-01-01

Functional genomics complements quantitative genetics in identifying disease-gene associations.

by Yuanfang Guan, Cheryl L Ackert-Bicknell, Braden Kell, Olga G Troyanskaya, Matthew A Hibbs
Published 2010-11-01

Mapping dynamic histone acetylation patterns to gene expression in nanog-depleted murine embryonic stem cells.

by Florian Markowetz, Klaas W Mulder, Edoardo M Airoldi, Ihor R Lemischka, Olga G Troyanskaya
Published 2010-12-01

Minor Isozymes Tailor Yeast Metabolism to Carbon Availability

by Patrick H. Bradley, Patrick A. Gibney, David Botstein, Olga G. Troyanskaya, Joshua D. Rabinowitz
Published 2019-02-01

A genomewide functional network for the laboratory mouse.

by Yuanfang Guan, Chad L Myers, Rong Lu, Ihor R Lemischka, Carol J Bult, Olga G Troyanskaya
Published 2008-09-01

Transcriptome analysis of adult Caenorhabditis elegans cells reveals tissue-specific gene and isoform expression.

by Rachel Kaletsky, Victoria Yao, April Williams, Alexi M Runnels, Alicja Tadych, Shiyi Zhou, Olga G Troyanskaya, Coleen T Murphy
Published 2018-08-01

Directing experimental biology: a case study in mitochondrial biogenesis.

by Matthew A Hibbs, Chad L Myers, Curtis Huttenhower, David C Hess, Kai Li, Amy A Caudy, Olga G Troyanskaya
Published 2009-03-01

Lack of a site-specific phosphorylation of Presenilin 1 disrupts microglial gene networks and progenitors during development.

by Jose Henrique Ledo, Ran Zhang, Luka Mesin, Diego Mourão-Sá, Estefania P Azevedo, Olga G Troyanskaya, Victor Bustos, Paul Greengard
Published 2020-01-01

Functional knowledge transfer for high-accuracy prediction of under-studied biological processes.

by Christopher Y Park, Aaron K Wong, Casey S Greene, Jessica Rowland, Yuanfang Guan, Lars A Bongo, Rebecca D Burdine, Olga G Troyanskaya
Published 2013-01-01

Accurate genome-wide predictions of spatio-temporal gene expression during embryonic development.

by Jian Zhou, Ignacio E Schor, Victoria Yao, Chandra L Theesfeld, Raquel Marco-Ferreres, Alicja Tadych, Eileen E M Furlong, Olga G Troyanskaya
Published 2019-09-01

Correction: Lack of a site-specific phosphorylation of Presenilin 1 disrupts microglial gene networks and progenitors during development.

by Jose Henrique Ledo, Ran Zhang, Luka Mesin, Diego Mourão-Sá, Estefania P Azevedo, Hernandez Moura Silva, Olga G Troyanskaya, Victor Bustos, Paul Greengard
Published 2021-01-01

Predicting cellular growth from gene expression signatures.

by Edoardo M Airoldi, Curtis Huttenhower, David Gresham, Charles Lu, Amy A Caudy, Maitreya J Dunham, James R Broach, David Botstein, Olga G Troyanskaya
Published 2009-01-01

Tissue-specific functional networks for prioritizing phenotype and disease genes.

by Yuanfang Guan, Dmitriy Gorenshteyn, Margit Burmeister, Aaron K Wong, John C Schimenti, Mary Ann Handel, Carol J Bult, Matthew A Hibbs, Olga G Troyanskaya
Published 2012-01-01

Metabolic network rewiring of propionate flux compensates vitamin B12 deficiency in C. elegans

by Emma Watson, Viridiana Olin-Sandoval, Michael J Hoy, Chi-Hua Li, Timo Louisse, Victoria Yao, Akihiro Mori, Amy D Holdorf, Olga G Troyanskaya, Markus Ralser, Albertha JM Walhout
Published 2016-07-01