Independent effects of protein core size and expression on residue-level structure-evolution relationships.

by Eric A Franzosa, Yu Xia
Published 2012-01-01

Signatures of pleiotropy, economy and convergent evolution in a domain-resolved map of human-virus protein-protein interaction networks.

by Sara Garamszegi, Eric A Franzosa, Yu Xia
Published 2013-01-01

Integrated assessment of genomic correlates of protein evolutionary rate.

by Yu Xia, Eric A Franzosa, Mark B Gerstein
Published 2009-06-01

Toward a three-dimensional view of protein networks between species

by Eric A. Franzosa, Sara eGaramszegi, Yu eXia
Published 2012-12-01

A conserved bacterial protein induces pancreatic beta cell expansion during zebrafish development

by Jennifer Hampton Hill, Eric A Franzosa, Curtis Huttenhower, Karen Guillemin
Published 2016-12-01

Strain-level epidemiology of microbial communities and the human microbiome

by Yan Yan, Long H. Nguyen, Eric A. Franzosa, Curtis Huttenhower
Published 2020-08-01

Heterozygous yeast deletion collection screens reveal essential targets of Hsp90.

by Eric A Franzosa, Véronique Albanèse, Judith Frydman, Yu Xia, Amie J McClellan
Published 2011-01-01

High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED.

by James Kaminski, Molly K Gibson, Eric A Franzosa, Nicola Segata, Gautam Dantas, Curtis Huttenhower
Published 2015-12-01

Experimental design and quantitative analysis of microbial community multiomics

by Himel Mallick, Siyuan Ma, Eric A. Franzosa, Tommi Vatanen, Xochitl C. Morgan, Curtis Huttenhower
Published 2017-11-01

Host genetic variation and its microbiome interactions within the Human Microbiome Project

by Raivo Kolde, Eric A. Franzosa, Gholamali Rahnavard, Andrew Brantley Hall, Hera Vlamakis, Christine Stevens, Mark J. Daly, Ramnik J. Xavier, Curtis Huttenhower
Published 2018-01-01

Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences

by Himel Mallick, Eric A. Franzosa, Lauren J. Mclver, Soumya Banerjee, Alexandra Sirota-Madi, Aleksandar D. Kostic, Clary B. Clish, Hera Vlamakis, Ramnik J. Xavier, Curtis Huttenhower
Published 2019-07-01

A reproducible approach to high-throughput biological data acquisition and integration

by Daniela Börnigen, Yo Sup Moon, Gholamali Rahnavard, Levi Waldron, Lauren McIver, Afrah Shafquat, Eric A. Franzosa, Larissa Miropolsky, Christopher Sweeney, Xochitl C. Morgan, Wendy S. Garrett, Curtis Huttenhower
Published 2015-03-01

Determinants of Staphylococcus aureus carriage in the developing infant nasal microbiome

by Emma K. Accorsi, Eric A. Franzosa, Tiffany Hsu, Regina Joice Cordy, Ayala Maayan-Metzger, Hanaa Jaber, Aylana Reiss-Mandel, Madeleine Kline, Casey DuLong, Marc Lipsitch, Gili Regev-Yochay, Curtis Huttenhower
Published 2020-12-01

Fluoride Depletes Acidogenic Taxa in Oral but Not Gut Microbial Communities in Mice

by Koji Yasuda, Tiffany Hsu, Carey A. Gallini, Lauren J. Mclver, Emma Schwager, Andy Shi, Casey R. DuLong, Randall N. Schwager, Galeb S. Abu-Ali, Eric A. Franzosa, Wendy S. Garrett, Curtis Huttenhower, Xochitl C. Morgan, Jian Xu
Published 2017-08-01

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

by Francesco Beghini, Lauren J McIver, Aitor Blanco-Míguez, Leonard Dubois, Francesco Asnicar, Sagun Maharjan, Ana Mailyan, Paolo Manghi, Matthias Scholz, Andrew Maltez Thomas, Mireia Valles-Colomer, George Weingart, Yancong Zhang, Moreno Zolfo, Curtis Huttenhower, Eric A Franzosa, Nicola Segata
Published 2021-05-01

Dietary fiber intake, the gut microbiome, and chronic systemic inflammation in a cohort of adult men

by Wenjie Ma, Long H. Nguyen, Mingyang Song, Dong D. Wang, Eric A. Franzosa, Yin Cao, Amit Joshi, David A. Drew, Raaj Mehta, Kerry L. Ivey, Lisa L. Strate, Edward L. Giovannucci, Jacques Izard, Wendy Garrett, Eric B. Rimm, Curtis Huttenhower, Andrew T. Chan
Published 2021-06-01