Hybrid modeling of cell signaling and transcriptional reprogramming and its application in C. elegans development

by Elana J Fertig, Ludmila V Danilova, Alexander V Favorov, Alexander V Favorov, Alexander V Favorov, Michael F Ochs, Michael F Ochs
Published 2011-11-01

ZNF-mediated resistance to imatinib mesylate in gastrointestinal stromal tumor.

by Lori Rink, Michael F Ochs, Yan Zhou, Margaret von Mehren, Andrew K Godwin
Published 2013-01-01

Promoter methylation in head and neck squamous cell carcinoma cell lines is significantly different than methylation in primary tumors and xenografts.

by Patrick T Hennessey, Michael F Ochs, Wojciech W Mydlarz, Wayne Hsueh, Leslie Cope, Wayne Yu, Joseph A Califano
Published 2011-01-01

Toward Signaling-Driven Biomarkers Immune to Normal Tissue Contamination

by John C. Stansfield, Matthew Rusay, Roger Shan, Conor Kelton, Daria A. Gaykalova, Elana J. Fertig, Joseph A. Califano, Michael F. Ochs
Published 2016-02-01

Toward Signaling-Driven Biomarkers Immune to Normal Tissue Contamination

by John C. Stansfield, Matthew Rusay, Roger Shan, Conor Kelton, Daria A. Gaykalova, Elana J. Fertig, Joseph A. Califano, Michael F. Ochs
Published 2016-01-01

Preferential activation of the hedgehog pathway by epigenetic modulations in HPV negative HNSCC identified with meta-pathway analysis.

by Elana J Fertig, Ana Markovic, Ludmila V Danilova, Daria A Gaykalova, Leslie Cope, Christine H Chung, Michael F Ochs, Joseph A Califano
Published 2013-01-01

Correction: Serum microRNA Biomarkers for Detection of Non-Small Cell Lung Cancer

by Patrick T. Hennessey, Tiffany Sanford, Ashish Choudhary, Wojciech W. Mydlarz, David Brown, Alex Tamas Adai, Michael F. Ochs, Steven A. Ahrendt, Elizabeth Mambo, Joseph A. Califano
Published 2012-01-01

Serum microRNA biomarkers for detection of non-small cell lung cancer.

by Patrick T Hennessey, Tiffany Sanford, Ashish Choudhary, Wojciech W Mydlarz, David Brown, Alex Tamas Adai, Michael F Ochs, Steven A Ahrendt, Elizabeth Mambo, Joseph A Califano
Published 2012-01-01

Correction: Serum microRNA Biomarkers for Detection of Non-Small Cell Lung Cancer.

by Patrick T. Hennessey, Tiffany Sanford, Ashish Choudhary, Wojciech W. Mydlarz, David Brown, Alex Tamas Adai, Michael F. Ochs, Steven A. Ahrendt, Elizabeth Mambo, Joseph A. Califano
Published 2012-01-01

Integrative discovery of epigenetically derepressed cancer testis antigens in NSCLC.

by Chad A Glazer, Ian M Smith, Michael F Ochs, Shahnaz Begum, William Westra, Steven S Chang, Wenyue Sun, Sheetal Bhan, Zubair Khan, Steven Ahrendt, Joseph A Califano
Published 2009-12-01

MAGEB2 is activated by promoter demethylation in head and neck squamous cell carcinoma.

by Kavita M Pattani, Ethan Soudry, Chad A Glazer, Michael F Ochs, Hao Wang, Juliana Schussel, Wenyue Sun, Patrick Hennessey, Wojciech Mydlarz, Myriam Loyo, Semra Demokan, Ian M Smith, Joseph A Califano
Published 2012-01-01

Expression microarray analysis reveals alternative splicing of LAMA3 and DST genes in head and neck squamous cell carcinoma.

by Ryan Li, Michael F Ochs, Sun Mi Ahn, Patrick Hennessey, Marietta Tan, Ethan Soudry, Daria A Gaykalova, Mamoru Uemura, Mariana Brait, Chunbo Shao, William Westra, Justin Bishop, Elana J Fertig, Joseph A Califano
Published 2014-01-01

Coordinated activation of candidate proto-oncogenes and cancer testes antigens via promoter demethylation in head and neck cancer and lung cancer.

by Ian M Smith, Chad A Glazer, Suhail K Mithani, Michael F Ochs, Wenyue Sun, Sheetal Bhan, Alexander Vostrov, Ziedulla Abdullaev, Victor Lobanenkov, Andrew Gray, Chunyan Liu, Steven S Chang, Kimberly L Ostrow, William H Westra, Shahnaz Begum, Mousumi Dhara, Joseph Califano
Published 2009-01-01

Outlier Analysis Defines Zinc Finger Gene Family DNA Methylation in Tumors and Saliva of Head and Neck Cancer Patients.

by Daria A Gaykalova, Rajita Vatapalli, Yingying Wei, Hua-Ling Tsai, Hao Wang, Chi Zhang, Patrick T Hennessey, Theresa Guo, Marietta Tan, Ryan Li, Julie Ahn, Zubair Khan, William H Westra, Justin A Bishop, David Zaboli, Wayne M Koch, Tanbir Khan, Michael F Ochs, Joseph A Califano
Published 2015-01-01

Correction: Novel Insight into Mutational Landscape of Head and Neck Squamous Cell Carcinoma.

by Daria A Gaykalova, Elizabeth Mambo, Ashish Choudhary, Jeffery Houghton, Kalyan Buddavarapu, Tiffany Sanford, Will Darden, Alex Adai, Andrew Hadd, Gary Latham, Ludmila V Danilova, Justin Bishop, Ryan J Li, William H Westra, Patrick Hennessey, Wayne M Koch, Michael F Ochs, Joseph A Califano, Wenyue Sun
Published 2020-01-01

A Novel Cross-Disciplinary Multi-Institute Approach to Translational Cancer Research: Lessons Learned from Pennsylvania Cancer Alliance Bioinformatics Consortium (PCABC)

by Ashokkumar A. Patel, John R. Gilbertson, Louise C. Showe, Jack W. London, Eric Ross, Michael F. Ochs, Joseph Carver, Andrea Lazarus, Anil V. Parwani, Rajiv Dhir, J. Robert Beck, Michael Liebman, Fernando U. Garcia, Jeff Prichard, Myra Wilkerson, Ronald B. Herberman, Michael J. Becich
Published 2007-01-01

A Novel Cross-Disciplinary Multi-Institute Approach to Translational Cancer Research: Lessons Learned from Pennsylvania Cancer Alliance Bioinformatics Consortium (PCABC)

by Ashokkumar A. Patel, John R. Gilbertson, Louise C. Showe, Jack W. London, Eric Ross, Michael F. Ochs, Joseph Carver, Andrea Lazarus, Anil V. Parwani, Rajiv Dhir, J. Robert Beck, Michael Liebman, Fernando U. Garcia, Jeff Prichard, Myra Wilkerson, Ronald B. Herberman, Michael J. Becich
Published 2007-01-01

Novel insight into mutational landscape of head and neck squamous cell carcinoma.

by Daria A Gaykalova, Elizabeth Mambo, Ashish Choudhary, Jeffery Houghton, Kalyan Buddavarapu, Tiffany Sanford, Will Darden, Alex Adai, Andrew Hadd, Gary Latham, Ludmila V Danilova, Justin Bishop, Ryan J Li, William H Westra, Patrick Hennessey, Wayne M Koch, Michael F Ochs, Joseph A Califano, Wenyue Sun
Published 2014-01-01