Extracellular Vesicles Released by Tumor Endothelial Cells Spread Immunosuppressive and Transforming Signals Through Various Recipient Cells

by Tatiana Lopatina, Enrica Favaro, Ludmila Danilova, Ludmila Danilova, Elana J. Fertig, Alexander V. Favorov, Alexander V. Favorov, Luciane T. Kagohara, Tiziana Martone, Benedetta Bussolati, Renato Romagnoli, Roberto Albera, Giancarlo Pecorari, Maria Felice Brizzi, Giovanni Camussi, Daria A. Gaykalova, Daria A. Gaykalova
Published 2020-09-01

Toward Signaling-Driven Biomarkers Immune to Normal Tissue Contamination

by John C. Stansfield, Matthew Rusay, Roger Shan, Conor Kelton, Daria A. Gaykalova, Elana J. Fertig, Joseph A. Califano, Michael F. Ochs
Published 2016-02-01

Toward Signaling-Driven Biomarkers Immune to Normal Tissue Contamination

by John C. Stansfield, Matthew Rusay, Roger Shan, Conor Kelton, Daria A. Gaykalova, Elana J. Fertig, Joseph A. Califano, Michael F. Ochs
Published 2016-01-01

Preferential activation of the hedgehog pathway by epigenetic modulations in HPV negative HNSCC identified with meta-pathway analysis.

by Elana J Fertig, Ana Markovic, Ludmila V Danilova, Daria A Gaykalova, Leslie Cope, Christine H Chung, Michael F Ochs, Joseph A Califano
Published 2013-01-01

Expression microarray analysis reveals alternative splicing of LAMA3 and DST genes in head and neck squamous cell carcinoma.

by Ryan Li, Michael F Ochs, Sun Mi Ahn, Patrick Hennessey, Marietta Tan, Ethan Soudry, Daria A Gaykalova, Mamoru Uemura, Mariana Brait, Chunbo Shao, William Westra, Justin Bishop, Elana J Fertig, Joseph A Califano
Published 2014-01-01

CancerInSilico: An R/Bioconductor package for combining mathematical and statistical modeling to simulate time course bulk and single cell gene expression data in cancer.

by Thomas D Sherman, Luciane T Kagohara, Raymon Cao, Raymond Cheng, Matthew Satriano, Michael Considine, Gabriel Krigsfeld, Ruchira Ranaweera, Yong Tang, Sandra A Jablonski, Genevieve Stein-O'Brien, Daria A Gaykalova, Louis M Weiner, Christine H Chung, Elana J Fertig
Published 2018-06-01

Suprabasin is hypomethylated and associated with metastasis in salivary adenoid cystic carcinoma.

by Chunbo Shao, Marietta Tan, Justin A Bishop, Jia Liu, Weiliang Bai, Daria A Gaykalova, Takenori Ogawa, Ami R Vikani, Yuri Agrawal, Ryan J Li, Myoung Sook Kim, William H Westra, David Sidransky, Joseph A Califano, Patrick K Ha
Published 2012-01-01

Integrated time course omics analysis distinguishes immediate therapeutic response from acquired resistance

by Genevieve Stein-O’Brien, Luciane T. Kagohara, Sijia Li, Manjusha Thakar, Ruchira Ranaweera, Hiroyuki Ozawa, Haixia Cheng, Michael Considine, Sandra Schmitz, Alexander V. Favorov, Ludmila V. Danilova, Joseph A. Califano, Evgeny Izumchenko, Daria A. Gaykalova, Christine H. Chung, Elana J. Fertig
Published 2018-05-01

Outlier Analysis Defines Zinc Finger Gene Family DNA Methylation in Tumors and Saliva of Head and Neck Cancer Patients.

by Daria A Gaykalova, Rajita Vatapalli, Yingying Wei, Hua-Ling Tsai, Hao Wang, Chi Zhang, Patrick T Hennessey, Theresa Guo, Marietta Tan, Ryan Li, Julie Ahn, Zubair Khan, William H Westra, Justin A Bishop, David Zaboli, Wayne M Koch, Tanbir Khan, Michael F Ochs, Joseph A Califano
Published 2015-01-01

Correction: Novel Insight into Mutational Landscape of Head and Neck Squamous Cell Carcinoma.

by Daria A Gaykalova, Elizabeth Mambo, Ashish Choudhary, Jeffery Houghton, Kalyan Buddavarapu, Tiffany Sanford, Will Darden, Alex Adai, Andrew Hadd, Gary Latham, Ludmila V Danilova, Justin Bishop, Ryan J Li, William H Westra, Patrick Hennessey, Wayne M Koch, Michael F Ochs, Joseph A Califano, Wenyue Sun
Published 2020-01-01

Novel insight into mutational landscape of head and neck squamous cell carcinoma.

by Daria A Gaykalova, Elizabeth Mambo, Ashish Choudhary, Jeffery Houghton, Kalyan Buddavarapu, Tiffany Sanford, Will Darden, Alex Adai, Andrew Hadd, Gary Latham, Ludmila V Danilova, Justin Bishop, Ryan J Li, William H Westra, Patrick Hennessey, Wayne M Koch, Michael F Ochs, Joseph A Califano, Wenyue Sun
Published 2014-01-01

Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers

by Mizuo Ando, Yuki Saito, Guorong Xu, Nam Q. Bui, Kate Medetgul-Ernar, Minya Pu, Kathleen Fisch, Shuling Ren, Akihiro Sakai, Takahito Fukusumi, Chao Liu, Sunny Haft, John Pang, Adam Mark, Daria A. Gaykalova, Theresa Guo, Alexander V. Favorov, Srinivasan Yegnasubramanian, Elana J. Fertig, Patrick Ha, Pablo Tamayo, Tatsuya Yamasoba, Trey Ideker, Karen Messer, Joseph A. Califano
Published 2019-05-01

Publisher Correction: Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers

by Mizuo Ando, Yuki Saito, Guorong Xu, Nam Q. Bui, Kate Medetgul-Ernar, Minya Pu, Kathleen Fisch, Shuling Ren, Akihiro Sakai, Takahito Fukusumi, Chao Liu, Sunny Haft, John Pang, Adam Mark, Daria A. Gaykalova, Theresa Guo, Alexander V. Favorov, Srinivasan Yegnasubramanian, Elana J. Fertig, Patrick Ha, Pablo Tamayo, Tatsuya Yamasoba, Trey Ideker, Karen Messer, Joseph A. Califano
Published 2019-05-01