PhyloTempo: A Set of R Scripts for Assessing and Visualizing Temporal Clustering in Genealogies Inferred from Serially Sampled Viral Sequences

by Melissa M. Norström, Mattia C.F. Prosperi, Rebecca R. Gray, Annika C. Karlsson, Marco Salemi
Published 2012-01-01

PhyloTempo: A Set of R Scripts for Assessing and Visualizing Temporal Clustering in Genealogies Inferred from Serially Sampled Viral Sequences

by Melissa M. Norström, Mattia C.F. Prosperi, Rebecca R. Gray, Annika C. Karlsson, Marco Salemi
Published 2012-06-01

The threshold bootstrap clustering: a new approach to find families or transmission clusters within molecular quasispecies.

by Mattia C F Prosperi, Andrea De Luca, Simona Di Giambenedetto, Laura Bracciale, Massimiliano Fabbiani, Roberto Cauda, Marco Salemi
Published 2010-10-01

Emergence of recombinant Mayaro virus strains from the Amazon basin

by Carla Mavian, Brittany D. Rife, James Jarad Dollar, Eleonora Cella, Massimo Ciccozzi, Mattia C. F. Prosperi, John Lednicky, J. Glenn Morris, Ilaria Capua, Marco Salemi
Published 2017-08-01

Correction: Antiretroviral Therapy Optimisation without Genotype Resistance Testing: A Perspective on Treatment History Based Models.

by Mattia C. F. Prosperi, Michal Rosen-Zvi, André Altmann, Maurizio Zazzi, Simona Di Giambenedetto, Rolf Kaiser, Eugen Schülter, Daniel Struck, Peter Sloot, David A. van de Vijver, Anne-Mieke Vandamme, Anders Sönnerborg
Published 2011-01-01

Can linear regression modeling help clinicians in the interpretation of genotypic resistance data? An application to derive a lopinavir-score.

by Alessandro Cozzi-Lepri, Mattia C F Prosperi, Jesper Kjær, David Dunn, Roger Paredes, Caroline A Sabin, Jens D Lundgren, Andrew N Phillips, Deenan Pillay, EuroSIDA Study, United Kingdom CHIC/United Kingdom HDRD Study
Published 2011-01-01

Correction: Antiretroviral Therapy Optimisation without Genotype Resistance Testing: A Perspective on Treatment History Based Models

by Mattia C. F. Prosperi, Michal Rosen-Zvi, André Altmann, Maurizio Zazzi, Simona Di Giambenedetto, Rolf Kaiser, Eugen Schülter, Daniel Struck, Peter Sloot, David A. van de Vijver, Anne-Mieke Vandamme, Anders Sönnerborg, for the EuResist and Virolab study groups
Published 2011-01-01

Antiretroviral therapy optimisation without genotype resistance testing: a perspective on treatment history based models.

by Mattia C F Prosperi, Michal Rosen-Zvi, André Altmann, Maurizio Zazzi, Simona Di Giambenedetto, Rolf Kaiser, Eugen Schülter, Daniel Struck, Peter Sloot, David A van de Vijver, Anne-Mieke Vandamme, Anne-Mieke Vandamme, Anders Sönnerborg, EuResist study group, Virolab study group
Published 2010-10-01