The intra-host evolutionary and population dynamics of human immunodeficiency virus type 1: a phylogenetic perspective

by Marco Salemi
Published 2013-06-01

Coding-Gene Coevolution Analysis of Rotavirus Proteins: A Bioinformatics and Statistical Approach

by Nabil Abid, Giovanni Chillemi, Marco Salemi
Published 2019-12-01

Predator-Prey Dynamics of Intra-Host Simian Immunodeficiency Virus Evolution Within the Untreated Host

by Brittany Rife Magalis, Brittany Rife Magalis, Patrick Autissier, Kenneth C. Williams, Xinguang Chen, Cameron Browne, Marco Salemi, Marco Salemi
Published 2021-10-01

Genome and plasmid diversity of Extended-Spectrum β-Lactamase-producing Escherichia coli ST131 – tracking phylogenetic trajectories with Bayesian inference

by Sofia Ny, Linus Sandegren, Marco Salemi, Christian G. Giske
Published 2019-07-01

A new evolutionary model for hepatitis C virus chronic infection.

by Rebecca R Gray, Marco Salemi, Paul Klenerman, Oliver G Pybus
Published 2012-01-01

High-resolution molecular epidemiology and evolutionary history of HIV-1 subtypes in Albania.

by Marco Salemi, Tulio de Oliveira, Massimo Ciccozzi, Giovanni Rezza, Maureen M Goodenow
Published 2008-01-01

Islands as Hotspots for Emerging Mosquito-Borne Viruses: A One-Health Perspective

by Carla Mavian, Melissa Dulcey, Olga Munoz, Marco Salemi, Amy Y. Vittor, Ilaria Capua
Published 2018-12-01

PhyloTempo: A Set of R Scripts for Assessing and Visualizing Temporal Clustering in Genealogies Inferred from Serially Sampled Viral Sequences

by Melissa M. Norström, Mattia C.F. Prosperi, Rebecca R. Gray, Annika C. Karlsson, Marco Salemi
Published 2012-01-01

PhyloTempo: A Set of R Scripts for Assessing and Visualizing Temporal Clustering in Genealogies Inferred from Serially Sampled Viral Sequences

by Melissa M. Norström, Mattia C.F. Prosperi, Rebecca R. Gray, Annika C. Karlsson, Marco Salemi
Published 2012-06-01

Phylodynamics of HIV-1 in lymphoid and non-lymphoid tissues reveals a central role for the thymus in emergence of CXCR4-using quasispecies.

by Marco Salemi, Brant R Burkhardt, Rebecca R Gray, Guity Ghaffari, John W Sleasman, Maureen M Goodenow
Published 2007-09-01

Phylodynamic applications in 21st century global infectious disease research

by Brittany D Rife, Carla Mavian, Xinguang Chen, Massimo Ciccozzi, Marco Salemi, Jae Min, Mattia CF Prosperi
Published 2017-05-01

The spread of HIV in Pakistan: bridging of the epidemic between populations.

by Muhammad R Khanani, Mehreen Somani, Sadiq S Rehmani, Nazle M C Veras, Marco Salemi, Syed H Ali
Published 2011-01-01

Distinct patterns of HIV-1 evolution within metastatic tissues in patients with non-Hodgkins lymphoma.

by Marco Salemi, Susanna L Lamers, Leanne C Huysentruyt, Derek Galligan, Rebecca R Gray, Alanna Morris, Michael S McGrath
Published 2009-12-01

The threshold bootstrap clustering: a new approach to find families or transmission clusters within molecular quasispecies.

by Mattia C F Prosperi, Andrea De Luca, Simona Di Giambenedetto, Laura Bracciale, Massimiliano Fabbiani, Roberto Cauda, Marco Salemi
Published 2010-10-01

HIV-1 Evolutionary Patterns Associated with Metastatic Kaposi’s Sarcoma during AIDS

by Susanna L. Lamers, Rebecca Rose, David J. Nolan, Gary B. Fogel, Andrew E. Barbier, Marco Salemi, Michael S. McGrath
Published 2016-01-01

Exploring the molecular epidemiology and evolutionary dynamics of influenza A virus in Taiwan.

by Jih-Hui Lin, Shu-Chun Chiu, Yung-Cheng Lin, Ju-Chien Cheng, Ho-Sheng Wu, Marco Salemi, Hsin-Fu Liu
Published 2013-01-01

Multiple Recombination Events and Strong Purifying Selection at the Origin of SARS-CoV-2 Spike Glycoprotein Increased Correlated Dynamic Movements

by Massimiliano S. Tagliamonte, Nabil Abid, Stefano Borocci, Elisa Sangiovanni, David A. Ostrov, Sergei L. Kosakovsky Pond, Marco Salemi, Giovanni Chillemi, Carla Mavian
Published 2021-12-01

A new "American" subgroup of African-lineage Chikungunya virus detected in and isolated from mosquitoes collected in Haiti, 2016.

by Sarah Keller White, Carla Mavian, Marco Salemi, John Glenn Morris, Maha A Elbadry, Bernard A Okech, John A Lednicky, James C Dunford
Published 2018-01-01

Viral Enrichment Methods Affect the Detection but Not Sequence Variation of West Nile Virus in Equine Brain Tissue

by Dhani Prakoso, Michael J. Dark, Anthony F. Barbet, Marco Salemi, Kelli L. Barr, Junjie J. Liu, Nanny Wenzlow, Thomas B. Waltzek, Maureen T. Long
Published 2018-12-01

Baseline CD4+ T cell counts correlates with HIV-1 synonymous rate in HLA-B*5701 subjects with different risk of disease progression.

by Melissa M Norström, Nazle M Veras, Wei Huang, Mattia C F Proper, Jennifer Cook, Wendy Hartogensis, Frederick M Hecht, Annika C Karlsson, Marco Salemi
Published 2014-09-01