Machine Learning Leveraging Genomes from Metagenomes Identifies Influential Antibiotic Resistance Genes in the Infant Gut Microbiome

by Sumayah F. Rahman, Matthew R. Olm, Michael J. Morowitz, Jillian F. Banfield, Nicola Segata
Published 2018-01-01

Consistent Metagenome-Derived Metrics Verify and Delineate Bacterial Species Boundaries

by Matthew R. Olm, Alexander Crits-Christoph, Spencer Diamond, Adi Lavy, Paula B. Matheus Carnevali, Jillian F. Banfield
Published 2020-01-01

Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms

by Matthew R. Olm, Patrick T. West, Brandon Brooks, Brian A. Firek, Robyn Baker, Michael J. Morowitz, Jillian F. Banfield
Published 2019-02-01

Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome

by Brandon Brooks, Matthew R. Olm, Brian A. Firek, Robyn Baker, Brian C. Thomas, Michael J. Morowitz, Jillian F. Banfield
Published 2017-11-01

Combined analysis of microbial metagenomic and metatranscriptomic sequencing data to assess in situ physiological conditions in the premature infant gut.

by Yonatan Sher, Matthew R Olm, Tali Raveh-Sadka, Christopher T Brown, Ruth Sher, Brian Firek, Robyn Baker, Michael J Morowitz, Jillian F Banfield
Published 2020-01-01

Infant gut strain persistence is associated with maternal origin, phylogeny, and traits including surface adhesion and iron acquisition

by Yue Clare Lou, Matthew R. Olm, Spencer Diamond, Alexander Crits-Christoph, Brian A. Firek, Robyn Baker, Michael J. Morowitz, Jillian F. Banfield
Published 2021-09-01

The Source and Evolutionary History of a Microbial Contaminant Identified Through Soil Metagenomic Analysis

by Matthew R. Olm, Cristina N. Butterfield, Alex Copeland, T. Christian Boles, Brian C. Thomas, Jillian F. Banfield, C. Titus Brown, Dianne K. Newman
Published 2017-02-01

Hospitalized Premature Infants Are Colonized by Related Bacterial Strains with Distinct Proteomic Profiles

by Christopher T. Brown, Weili Xiong, Matthew R. Olm, Brian C. Thomas, Robyn Baker, Brian Firek, Michael J. Morowitz, Robert L. Hettich, Jillian F. Banfield, Michael S. Gilmore
Published 2018-04-01

The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms

by Brandon Brooks, Matthew R. Olm, Brian A. Firek, Robyn Baker, David Geller-McGrath, Sophia R. Reimer, Karina R. Soenjoyo, Jennifer S. Yip, Dylan Dahan, Brian C. Thomas, Michael J. Morowitz, Jillian F. Banfield
Published 2018-06-01

Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics

by Patrick T. West, Samantha L. Peters, Matthew R. Olm, Feiqiao B. Yu, Haley Gause, Yue Clare Lou, Brian A. Firek, Robyn Baker, Alexander D. Johnson, Michael J. Morowitz, Robert L. Hettich, Jillian F. Banfield
Published 2021-06-01

Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria

by Paula B. Matheus Carnevali, Frederik Schulz, Cindy J. Castelle, Rose S. Kantor, Patrick M. Shih, Itai Sharon, Joanne M. Santini, Matthew R. Olm, Yuki Amano, Brian C. Thomas, Karthik Anantharaman, David Burstein, Eric D. Becraft, Ramunas Stepanauskas, Tanja Woyke, Jillian F. Banfield
Published 2019-01-01

Author Correction: Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria

by Paula B. Matheus Carnevali, Frederik Schulz, Cindy J. Castelle, Rose S. Kantor, Patrick M. Shih, Itai Sharon, Joanne M. Santini, Matthew R. Olm, Yuki Amano, Brian C. Thomas, Karthik Anantharaman, David Burstein, Eric D. Becraft, Ramunas Stepanauskas, Tanja Woyke, Jillian F. Banfield
Published 2019-03-01

Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale

by Paula B. Matheus Carnevali, Adi Lavy, Alex D. Thomas, Alexander Crits-Christoph, Spencer Diamond, Raphaël Méheust, Matthew R. Olm, Allison Sharrar, Shufei Lei, Wenming Dong, Nicola Falco, Nicholas Bouskill, Michelle E. Newcomer, Peter Nico, Haruko Wainwright, Dipankar Dwivedi, Kenneth H. Williams, Susan Hubbard, Jillian F. Banfield
Published 2021-05-01