Mahotas: Open source software for scriptable computer vision

by Luis Pedro Coelho
Published 2013-07-01

Jug: Software for Parallel Reproducible Computation in Python

by Luis Pedro Coelho
Published 2017-10-01

metaSNV: A tool for metagenomic strain level analysis.

by Paul Igor Costea, Robin Munch, Luis Pedro Coelho, Lucas Paoli, Shinichi Sunagawa, Peer Bork
Published 2017-01-01

NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language

by Luis Pedro Coelho, Renato Alves, Paulo Monteiro, Jaime Huerta-Cepas, Ana Teresa Freitas, Peer Bork
Published 2019-06-01

Quantitative 3D-imaging for cell biology and ecology of environmental microbial eukaryotes

by Sebastien Colin, Luis Pedro Coelho, Shinichi Sunagawa, Chris Bowler, Eric Karsenti, Peer Bork, Rainer Pepperkok, Colomban de Vargas
Published 2017-10-01

GUNC: detection of chimerism and contamination in prokaryotic genomes

by Askarbek Orakov, Anthony Fullam, Luis Pedro Coelho, Supriya Khedkar, Damian Szklarczyk, Daniel R. Mende, Thomas S. B. Schmidt, Peer Bork
Published 2021-06-01

Similarity of the dog and human gut microbiomes in gene content and response to diet

by Luis Pedro Coelho, Jens Roat Kultima, Paul Igor Costea, Coralie Fournier, Yuanlong Pan, Gail Czarnecki-Maulden, Matthew Robert Hayward, Sofia K. Forslund, Thomas Sebastian Benedikt Schmidt, Patrick Descombes, Janet R. Jackson, Qinghong Li, Peer Bork
Published 2018-04-01

Microbial abundance, activity and population genomic profiling with mOTUs2

by Alessio Milanese, Daniel R Mende, Lucas Paoli, Guillem Salazar, Hans-Joachim Ruscheweyh, Miguelangel Cuenca, Pascal Hingamp, Renato Alves, Paul I Costea, Luis Pedro Coelho, Thomas S. B. Schmidt, Alexandre Almeida, Alex L Mitchell, Robert D. Finn, Jaime Huerta-Cepas, Peer Bork, Georg Zeller, Shinichi Sunagawa
Published 2019-03-01