Global analysis of CPSF2-mediated alternative splicing: Integration of global iCLIP and transcriptome profiling data

by Ashish Misra, Jianhong Ou, Lihua Julie Zhu, Michael R. Green
Published 2015-12-01

OneStopRNAseq: A Web Application for Comprehensive and Efficient Analyses of RNA-Seq Data

by Rui Li, Kai Hu, Haibo Liu, Michael R. Green, Lihua Julie Zhu
Published 2020-10-01

Robust Identification of Developmentally Active Endothelial Enhancers in Zebrafish Using FANS-Assisted ATAC-Seq

by Aurelie Quillien, Mary Abdalla, Jun Yu, Jianhong Ou, Lihua Julie Zhu, Nathan D. Lawson
Published 2017-07-01

Non-canonical TAF complexes regulate active promoters in human embryonic stem cells

by Glenn A Maston, Lihua Julie Zhu, Lynn Chamberlain, Ling Lin, Minggang Fang, Michael R Green
Published 2012-11-01

GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases

by Lihua Julie Zhu, Michael Lawrence, Ankit Gupta, Hervé Pagès, Alper Kucukural, Manuel Garber, Scot A. Wolfe
Published 2017-05-01

dagLogo: An R/Bioconductor package for identifying and visualizing differential amino acid group usage in proteomics data.

by Jianhong Ou, Haibo Liu, Niraj K Nirala, Alexey Stukalov, Usha Acharya, Michael R Green, Lihua Julie Zhu
Published 2020-01-01

ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data

by Jianhong Ou, Haibo Liu, Jun Yu, Michelle A. Kelliher, Lucio H. Castilla, Nathan D. Lawson, Lihua Julie Zhu
Published 2018-03-01

The histone H3K9 demethylase KDM3A promotes anoikis by transcriptionally activating pro-apoptotic genes BNIP3 and BNIP3L

by Victoria E Pedanou, Stéphane Gobeil, Sébastien Tabariès, Tessa M Simone, Lihua Julie Zhu, Peter M Siegel, Michael R Green
Published 2016-07-01

The coordinate actions of calcineurin and Hog1 mediate the stress response through multiple nodes of the cell cycle network.

by Cassandra M Leech, Mackenzie J Flynn, Heather E Arsenault, Jianhong Ou, Haibo Liu, Lihua Julie Zhu, Jennifer A Benanti
Published 2020-04-01

Orthogonal Cas9–Cas9 chimeras provide a versatile platform for genome editing

by Mehmet Fatih Bolukbasi, Pengpeng Liu, Kevin Luk, Samantha F. Kwok, Ankit Gupta, Nadia Amrani, Erik J. Sontheimer, Lihua Julie Zhu, Scot A. Wolfe
Published 2018-11-01

Publisher Correction: Orthogonal Cas9-Cas9 chimeras provide a versatile platform for genome editing

by Mehmet Fatih Bolukbasi, Pengpeng Liu, Kevin Luk, Samantha F. Kwok, Ankit Gupta, Nadia Amrani, Erik J. Sontheimer, Lihua Julie Zhu, Scot A. Wolfe
Published 2018-12-01

miR-146a promotes the initiation and progression of melanoma by activating Notch signaling

by Matteo Forloni, Shaillay Kumar Dogra, Yuying Dong, Darryl Conte Jr, Jianhong Ou, Lihua Julie Zhu, April Deng, Meera Mahalingam, Michael R Green, Narendra Wajapeyee
Published 2014-02-01

Opposing Roles of FANCJ and HLTF Protect Forks and Restrain Replication during Stress

by Min Peng, Ke Cong, Nicholas J. Panzarino, Sumeet Nayak, Jennifer Calvo, Bin Deng, Lihua Julie Zhu, Monika Morocz, Lili Hegedus, Lajos Haracska, Sharon B. Cantor
Published 2018-09-01

Survival response to increased ceramide involves metabolic adaptation through novel regulators of glycolysis and lipolysis.

by Niraj K Nirala, Motiur Rahman, Stanley M Walls, Alka Singh, Lihua Julie Zhu, Takeshi Bamba, Eiichiro Fukusaki, Sargur M Srideshikan, Greg L Harris, Y Tony Ip, Rolf Bodmer, Usha R Acharya
Published 2013-06-01

UPRmt scales mitochondrial network expansion with protein synthesis via mitochondrial import in Caenorhabditis elegans

by Tomer Shpilka, YunGuang Du, Qiyuan Yang, Andrew Melber, Nandhitha Uma Naresh, Joshua Lavelle, Sookyung Kim, Pengpeng Liu, Hilla Weidberg, Rui Li, Jun Yu, Lihua Julie Zhu, Lara Strittmatter, Cole M. Haynes
Published 2021-01-01

Deficient spermiogenesis in mice lacking Rlim

by Feng Wang, Maria Gracia Gervasi, Ana Bošković, Fengyun Sun, Vera D Rinaldi, Jun Yu, Mary C Wallingford, Darya A Tourzani, Jesse Mager, Lihua Julie Zhu, Oliver J Rando, Pablo E Visconti, Lara Strittmatter, Ingolf Bach
Published 2021-02-01

The Lipid Handling Capacity of Subcutaneous Fat Is Programmed by mTORC2 during Development

by Wen-Yu Hsiao, Su Myung Jung, Yuefeng Tang, John A. Haley, Rui Li, Huawei Li, Camila Martinez Calejman, Joan Sanchez-Gurmaches, Chien-Min Hung, Amelia K. Luciano, Victoria DeMambro, Kathryn E. Wellen, Clifford J. Rosen, Lihua Julie Zhu, David A. Guertin
Published 2020-10-01

NmeCas9 is an intrinsically high-fidelity genome-editing platform

by Nadia Amrani, Xin D. Gao, Pengpeng Liu, Alireza Edraki, Aamir Mir, Raed Ibraheim, Ankit Gupta, Kanae E. Sasaki, Tong Wu, Paul D. Donohoue, Alexander H. Settle, Alexandra M. Lied, Kyle McGovern, Chris K. Fuller, Peter Cameron, Thomas G. Fazzio, Lihua Julie Zhu, Scot A. Wolfe, Erik J. Sontheimer
Published 2018-12-01

Gene expression signature of atypical breast hyperplasia and regulation by SFRP1

by Kelly J. Gregory, Amy L. Roberts, Erin M. Conlon, Jacob A. Mayfield, Mary J. Hagen, Giovanna M. Crisi, Brooke A. Bentley, Jeffrey J. Kane, Grace Makari-Judson, Holly S. Mason, Jun Yu, Lihua Julie Zhu, Karl Simin, Jacob P. S. Johnson, Ashraf Khan, Ben R. Schneider, Sallie S. Schneider, D. Joseph Jerry
Published 2019-06-01