A data-driven interactome of synergistic genes improves network-based cancer outcome prediction.

by Amin Allahyar, Joske Ubels, Jeroen de Ridder
Published 2019-02-01

Predicting pathogenic non-coding SVs disrupting the 3D genome in 1646 whole cancer genomes using multiple instance learning

by Marleen M. Nieboer, Luan Nguyen, Jeroen de Ridder
Published 2021-07-01

Value pluralism in research integrity

by Rik Peels, Jeroen de Ridder, Tamarinde Haven, Lex Bouter
Published 2019-08-01

From squiggle to basepair: computational approaches for improving nanopore sequencing read accuracy

by Franka J. Rang, Wigard P. Kloosterman, Jeroen de Ridder
Published 2018-07-01

Soft skills: an important asset acquired from organizing regional student group activities.

by Jeroen de Ridder, Pieter Meysman, Olugbenga Oluwagbemi, Thomas Abeel
Published 2014-07-01

Academia’s Big Five: a normative taxonomy for the epistemic responsibilities of universities [version 2; peer review: 2 approved]

by Rik Peels, René van Woudenberg, Jeroen de Ridder, Lex Bouter
Published 2020-07-01

Detecting statistically significant common insertion sites in retroviral insertional mutagenesis screens.

by Jeroen de Ridder, Anthony Uren, Jaap Kool, Marcel Reinders, Lodewyk Wessels
Published 2006-12-01

Don't Wear Your New Shoes (Yet): Taking the Right Steps to Become a Successful Principal Investigator.

by Jeroen de Ridder, Thomas Abeel, Magali Michaut, Venkata P. Satagopam, Nils Gehlenborg
Published 2013-01-01

Evrim Teorisinin Epistemik Statüsü

by Gülay Parlak, Gijberk Van den Brink, Jeroen De Ridder, René Van Woudenberg
Published 2018-12-01

Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex.

by Sepideh Babaei, Ahmed Mahfouz, Marc Hulsman, Boudewijn P F Lelieveldt, Jeroen de Ridder, Marcel Reinders
Published 2015-05-01

Three-dimensional analysis of single molecule FISH in human colon organoids

by Manja Omerzu, Nicola Fenderico, Buys de Barbanson, Joep Sprangers, Jeroen de Ridder, Madelon M. Maurice
Published 2019-08-01

TargetClone: A multi-sample approach for reconstructing subclonal evolution of tumors.

by Marleen M Nieboer, Lambert C J Dorssers, Roy Straver, Leendert H J Looijenga, Jeroen de Ridder
Published 2018-01-01

sv-callers: a highly portable parallel workflow for structural variant detection in whole-genome sequence data

by Arnold Kuzniar, Jason Maassen, Stefan Verhoeven, Luca Santuari, Carl Shneider, Wigard P. Kloosterman, Jeroen de Ridder
Published 2020-01-01

Predicting treatment benefit in multiple myeloma through simulation of alternative treatment effects

by Joske Ubels, Pieter Sonneveld, Erik H. van Beers, Annemiek Broijl, Martin H. van Vliet, Jeroen de Ridder
Published 2018-07-01

The young PI buzz: learning from the organizers of the Junior Principal Investigator Meeting at ISMB-ECCB 2013.

by Jeroen de Ridder, Yana Bromberg, Magali Michaut, Venkata P Satagopam, Manuel Corpas, Geoff MacIntyre, Theodore Alexandrov
Published 2013-01-01

Genome wide DNA methylation profiles provide clues to the origin and pathogenesis of germ cell tumors.

by Martin A Rijlaarsdam, David M J Tax, Ad J M Gillis, Lambert C J Dorssers, Devin C Koestler, Jeroen de Ridder, Leendert H J Looijenga
Published 2015-01-01

Chromatin landscapes of retroviral and transposon integration profiles.

by Johann de Jong, Waseem Akhtar, Jitendra Badhai, Alistair G Rust, Roland Rad, John Hilkens, Anton Berns, Maarten van Lohuizen, Lodewyk F A Wessels, Jeroen de Ridder
Published 2014-04-01

Gamma-Retrovirus Integration Marks Cell Type-Specific Cancer Genes: A Novel Profiling Tool in Cancer Genomics.

by Kathryn L Gilroy, Anne Terry, Asif Naseer, Jeroen de Ridder, Amin Allahyar, Weiwei Wang, Eric Carpenter, Andrew Mason, Gane K-S Wong, Ewan R Cameron, Anna Kilbey, James C Neil
Published 2016-01-01

A Single Complex Agpat2 Allele in a Patient With Partial Lipodystrophy

by Marjoleine F. Broekema, Maarten P. G. Massink, Joep De Ligt, Edwin C. A. Stigter, Houshang Monajemi, Houshang Monajemi, Jeroen De Ridder, Boudewijn M. T. Burgering, Gijs W. van Haaften, Eric Kalkhoven
Published 2018-09-01

Insertional mutagenesis and deep profiling reveals gene hierarchies and a Myc/p53-dependent bottleneck in lymphomagenesis.

by Camille A Huser, Kathryn L Gilroy, Jeroen de Ridder, Anna Kilbey, Gillian Borland, Nancy Mackay, Alma Jenkins, Margaret Bell, Pawel Herzyk, Louise van der Weyden, David J Adams, Alistair G Rust, Ewan Cameron, James C Neil
Published 2014-02-01