RNA-Seq for Plant Pathogenic Bacteria

by Jeffrey A. Kimbrel, Yanming Di, Jason S. Cumbie, Jeff H. Chang
Published 2011-10-01

Length bias correction in gene ontology enrichment analysis using logistic regression.

by Gu Mi, Yanming Di, Sarah Emerson, Jason S Cumbie, Jeff H Chang
Published 2012-01-01

Genome-wide profiling and analysis of Arabidopsis siRNAs.

by Kristin D Kasschau, Noah Fahlgren, Elisabeth J Chapman, Christopher M Sullivan, Jason S Cumbie, Scott A Givan, James C Carrington
Published 2007-03-01

Variable suites of non-effector genes are co-regulated in the type III secretion virulence regulon across the Pseudomonas syringae phylogeny.

by Tatiana S Mucyn, Scott Yourstone, Abigail L Lind, Surojit Biswas, Marc T Nishimura, David A Baltrus, Jason S Cumbie, Jeff H Chang, Corbin D Jones, Jeffery L Dangl, Sarah R Grant
Published 2014-01-01

High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes.

by Noah Fahlgren, Miya D Howell, Kristin D Kasschau, Elisabeth J Chapman, Christopher M Sullivan, Jason S Cumbie, Scott A Givan, Theresa F Law, Sarah R Grant, Jeffery L Dangl, James C Carrington
Published 2007-02-01

GENE-counter: a computational pipeline for the analysis of RNA-Seq data for gene expression differences.

by Jason S Cumbie, Jeffrey A Kimbrel, Yanming Di, Daniel W Schafer, Larry J Wilhelm, Samuel E Fox, Christopher M Sullivan, Aron D Curzon, James C Carrington, Todd C Mockler, Jeff H Chang
Published 2011-01-01

The genome of tolypocladium inflatum: evolution, organization, and expression of the cyclosporin biosynthetic gene cluster.

by Kathryn E Bushley, Rajani Raja, Pankaj Jaiswal, Jason S Cumbie, Mariko Nonogaki, Alexander E Boyd, C Alisha Owensby, Brian J Knaus, Justin Elser, Daniel Miller, Yanming Di, Kerry L McPhail, Joseph W Spatafora
Published 2013-06-01