System-Level Analysis of Alzheimer’s Disease Prioritizes Candidate Genes for Neurodegeneration

by Jeffrey L. Brabec, Montana Kay Lara, Anna L. Tyler, J. Matthew Mahoney, J. Matthew Mahoney
Published 2021-04-01

Genetic Interactions Affect Lung Function in Patients with Systemic Sclerosis

by Anna Tyler, J. Matthew Mahoney, Gregory W. Carter
Published 2020-01-01

Short-Range Temporal Interactions in Sleep; Hippocampal Spike Avalanches Support a Large Milieu of Sequential Activity Including Replay.

by J Matthew Mahoney, Ali S Titiz, Amanda E Hernan, Rod C Scott
Published 2016-01-01

WORMHOLE: Novel Least Diverged Ortholog Prediction through Machine Learning.

by George L Sutphin, J Matthew Mahoney, Keith Sheppard, David O Walton, Ron Korstanje
Published 2016-11-01

Percolation of collagen stress in a random network model of the alveolar wall

by Dylan T. Casey, Samer Bou Jawde, Jacob Herrmann, Vitor Mori, J. Matthew Mahoney, Béla Suki, Jason H. T. Bates
Published 2021-08-01

Systems level analysis of systemic sclerosis shows a network of immune and profibrotic pathways connected with genetic polymorphisms.

by J Matthew Mahoney, Jaclyn Taroni, Viktor Martyanov, Tammara A Wood, Casey S Greene, Patricia A Pioli, Monique E Hinchcliff, Michael L Whitfield
Published 2015-01-01

Environmental enrichment normalizes hippocampal timing coding in a malformed hippocampus.

by Amanda E Hernan, J Matthew Mahoney, Willie Curry, Greg Richard, Marcella M Lucas, Andrew Massey, Gregory L Holmes, Rod C Scott
Published 2018-01-01

State-Dependent Differences in Functional Connectivity in Young Children With Autism Spectrum Disorder

by Ashura W. Buckley, Rod Scott, Anna Tyler, J. Matthew Mahoney, Audrey Thurm, Cristan Farmer, Susan Swedo, Scott A. Burroughs, Gregory L. Holmes
Published 2015-12-01

Experimentally-derived fibroblast gene signatures identify molecular pathways associated with distinct subsets of systemic sclerosis patients in three independent cohorts.

by Michael E Johnson, J Matthew Mahoney, Jaclyn Taroni, Jennifer L Sargent, Eleni Marmarelis, Ming-Ru Wu, John Varga, Monique E Hinchcliff, Michael L Whitfield
Published 2015-01-01

Network-Based Functional Prediction Augments Genetic Association To Predict Candidate Genes for Histamine Hypersensitivity in Mice

by Anna L. Tyler, Abbas Raza, Dimitry N. Krementsov, Laure K. Case, Rui Huang, Runlin Z. Ma, Elizabeth P. Blankenhorn, Cory Teuscher, J. Matthew Mahoney
Published 2019-12-01

High-throughput quantitative histology in systemic sclerosis skin disease using computer vision

by Chase Correia, Seamus Mawe, Shane Lofgren, Roberta G. Marangoni, Jungwha Lee, Rana Saber, Kathleen Aren, Michelle Cheng, Shannon Teaw, Aileen Hoffmann, Isaac Goldberg, Shawn E. Cowper, Purvesh Khatri, Monique Hinchcliff, J. Matthew Mahoney
Published 2020-03-01