Rhea: a transparent and modular R pipeline for microbial profiling based on 16S rRNA gene amplicons

by Ilias Lagkouvardos, Sandra Fischer, Neeraj Kumar, Thomas Clavel
Published 2017-01-01

MiMiC: a bioinformatic approach for generation of synthetic communities from metagenomes

by Neeraj Kumar, Thomas C. A. Hitch, Dirk Haller, Ilias Lagkouvardos, Thomas Clavel
Published 2021-07-01

Alteration of Intestinal Microbiome of <i>Clostridioides difficile-</i>Infected Hamsters during the Treatment with Specific Cow Antibodies

by Hans-Jürgen Heidebrecht, Ilias Lagkouvardos, Sandra Reitmeier, Claudia Hengst, Ulrich Kulozik, Michael W. Pfaffl
Published 2021-06-01

Recent advances in culture-based gut microbiome research

by Thomas C.A. Hitch, Afrizal Afrizal, Thomas Riedel, Antonios Kioukis, Dirk Haller, Ilias Lagkouvardos, Jörg Overmann, Thomas Clavel
Published 2021-04-01

Processing Matters in Nutrient-Matched Laboratory Diets for Mice—Microbiome

by Jasmin Wenderlein, Linda F. Böswald, Sebastian Ulrich, Ellen Kienzle, Klaus Neuhaus, Ilias Lagkouvardos, Christian Zenner, Reinhard K. Straubinger
Published 2021-03-01

A Novel Primer Mixture for GH48 Genes: Quantification and Identification of Truly Cellulolytic Bacteria in Biogas Fermenters

by Regina Rettenmaier, Yat Kei Lo, Larissa Schmidt, Bernhard Munk, Ilias Lagkouvardos, Klaus Neuhaus, Wolfgang Schwarz, Wolfgang Liebl, Vladimir Zverlov
Published 2020-08-01

An Integrated Metagenome Catalog Reveals New Insights into the Murine Gut Microbiome

by Till R. Lesker, Abilash C. Durairaj, Eric J.C. Gálvez, Ilias Lagkouvardos, John F. Baines, Thomas Clavel, Alexander Sczyrba, Alice C. McHardy, Till Strowig
Published 2020-03-01

Synbiotic-driven improvement of metabolic disturbances is associated with changes in the gut microbiome in diet-induced obese mice

by Xinxin Ke, Alesia Walker, Sven-Bastiaan Haange, Ilias Lagkouvardos, Yuwen Liu, Philippe Schmitt-Kopplin, Martin von Bergen, Nico Jehmlich, Xin He, Thomas Clavel, Peter C.K. Cheung
Published 2019-04-01

Increased Pancreatic Protease Activity in Response to Antibiotics Impairs Gut Barrier and Triggers ColitisSummary

by Hongsup Yoon, Monika Schaubeck, Ilias Lagkouvardos, Andreas Blesl, Stephanie Heinzlmeir, Hannes Hahne, Thomas Clavel, Suchita Panda, Christina Ludwig, Bernhard Kuster, Chaysavanh Manichanh, Patrizia Kump, Dirk Haller, Gabriele Hörmannsperger
Published 2018-01-01

Pre-digest of unprotected DNA by Benzonase improves the representation of living skin bacteria and efficiently depletes host DNA

by Yacine Amar, Ilias Lagkouvardos, Rafaela L. Silva, Oluwaseun Ayodeji Ishola, Bärbel U. Foesel, Susanne Kublik, Anne Schöler, Sebastian Niedermeier, Rachela Bleuel, Alexander Zink, Klaus Neuhaus, Michael Schloter, Tilo Biedermann, Martin Köberle
Published 2021-05-01

Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family

by Ilias Lagkouvardos, Till R. Lesker, Thomas C. A. Hitch, Eric J. C. Gálvez, Nathiana Smit, Klaus Neuhaus, Jun Wang, John F. Baines, Birte Abt, Bärbel Stecher, Jörg Overmann, Till Strowig, Thomas Clavel
Published 2019-02-01

Dietary fat and gut microbiota interactions determine diet-induced obesity in mice

by Raphaela Kübeck, Catalina Bonet-Ripoll, Christina Hoffmann, Alesia Walker, Veronika Maria Müller, Valentina Luise Schüppel, Ilias Lagkouvardos, Birgit Scholz, Karl-Heinz Engel, Hannelore Daniel, Philippe Schmitt-Kopplin, Dirk Haller, Thomas Clavel, Martin Klingenspor
Published 2016-12-01

Endophytic Bacterial Isolates From Halophytes Demonstrate Phytopathogen Biocontrol and Plant Growth Promotion Under High Salinity

by Christos A. Christakis, Georgia Daskalogiannis, Anastasia Chatzaki, Emmanouil A. Markakis, Glykeria Mermigka, Angeliki Sagia, Giulio Flavio Rizzo, Vittoria Catara, Ilias Lagkouvardos, David J. Studholme, Panagiotis F. Sarris, Panagiotis F. Sarris, Panagiotis F. Sarris
Published 2021-05-01

Surface-Associated Lipoproteins Link Enterococcus faecalis Virulence to Colitogenic Activity in IL-10-Deficient Mice Independent of Their Expression Levels.

by Soeren Ocvirk, Irina G Sava, Isabella Lengfelder, Ilias Lagkouvardos, Natalie Steck, Jung H Roh, Sandrine Tchaptchet, Yinyin Bao, Jonathan J Hansen, Johannes Huebner, Ian M Carroll, Barbara E Murray, R Balfour Sartor, Dirk Haller
Published 2015-06-01

Integrated microbiota and metabolite profiles link Crohn’s disease to sulfur metabolism

by Amira Metwaly, Andreas Dunkel, Nadine Waldschmitt, Abilash Chakravarthy Durai Raj, Ilias Lagkouvardos, Ana Maria Corraliza, Aida Mayorgas, Margarita Martinez-Medina, Sinah Reiter, Michael Schloter, Thomas Hofmann, Matthieu Allez, Julian Panes, Azucena Salas, Dirk Haller
Published 2020-08-01

Infusion of donor feces affects the gut–brain axis in humans with metabolic syndrome

by Annick V. Hartstra, Valentina Schüppel, Sultan Imangaliyev, Anouk Schrantee, Andrei Prodan, Didier Collard, Evgeni Levin, Geesje Dallinga-Thie, Mariette T. Ackermans, Maaike Winkelmeijer, Stefan R. Havik, Amira Metwaly, Ilias Lagkouvardos, Anika Nier, Ina Bergheim, Mathias Heikenwalder, Andreas Dunkel, Aart J. Nederveen, Gerhard Liebisch, Giulia Mancano, Sandrine P. Claus, Alfonso Benítez-Páez, Susanne E. la Fleur, Jacques J. Bergman, Victor Gerdes, Yolanda Sanz, Jan Booij, Elles Kemper, Albert K. Groen, Mireille J. Serlie, Dirk Haller, Max Nieuwdorp
Published 2020-12-01

A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity

by David Wylensek, Thomas C. A. Hitch, Thomas Riedel, Afrizal Afrizal, Neeraj Kumar, Esther Wortmann, Tianzhe Liu, Saravanan Devendran, Till R. Lesker, Sara B. Hernández, Viktoria Heine, Eva M. Buhl, Paul M. D’Agostino, Fabio Cumbo, Thomas Fischöder, Marzena Wyschkon, Torey Looft, Valeria R. Parreira, Birte Abt, Heidi L. Doden, Lindsey Ly, João M. P. Alves, Markus Reichlin, Krzysztof Flisikowski, Laura Navarro Suarez, Anthony P. Neumann, Garret Suen, Tomas de Wouters, Sascha Rohn, Ilias Lagkouvardos, Emma Allen-Vercoe, Cathrin Spröer, Boyke Bunk, Anja J. Taverne-Thiele, Marcel Giesbers, Jerry M. Wells, Klaus Neuhaus, Angelika Schnieke, Felipe Cava, Nicola Segata, Lothar Elling, Till Strowig, Jason M. Ridlon, Tobias A. M. Gulder, Jörg Overmann, Thomas Clavel
Published 2020-12-01