Higher-order chromatin structure: bridging physics and biology

by Fudenberg, Geoffrey, Mirny, Leonid A.
Published 2016

Modeling chromosomes: Beyond pretty pictures

by Imakaev, Maksim Viktorovich, Fudenberg, Geoffrey, Mirny, Leonid A
Published 2017

High-order chromatin architecture determines the landscape of chromosomal alterations in cancer

by Fudenberg, Geoffrey, Getz, Gad, Meyerson, Matthew L., Mirny, Leonid A.
Published 2012

History of chromosome rearrangements reflects the spatial organization of yeast chromosomes

by Khrameeva, Ekaterina E, Gelfand, Mikhail S, Fudenberg, Geoffrey, Mirny, Leonid A
Published 2017

Chromatin Loops as Allosteric Modulators of Enhancer-Promoter Interactions

by Fudenberg, Geoffrey, Doyle, Boryana G., Imakaev, Maksim Viktorovich, Mirny, Leonid A
Published 2014

Emerging Evidence of Chromosome Folding by Loop Extrusion

by Fudenberg, Geoffrey, Abdennur, Nezar Alexander, Imakaev, Maxim, Goloborodko, Anton, Mirny, Leonid A.
Published 2020

Chromatin organization by an interplay of loop extrusion and compartmental segregation

by Fudenberg, Geoffrey, Nubler, Johannes, Imakaev, Maksim Viktorovich, Abdennur, Nezar Alexander, Mirny, Leonid A
Published 2019

Formation of Chromosomal Domains by Loop Extrusion

by Fudenberg, Geoffrey, Imakaev, Maksim Viktorovich, Lu, Carolyn, Goloborodko, Anton, Abdennur, Nezar Alexander, Mirny, Leonid A.
Published 2016

Organization of the Mitotic Chromosome

by Naumova, Natalia, Zhan, Ye, Lajoie, Bryan R., Dekker, Job, Imakaev, Maksim Viktorovich, Fudenberg, Geoffrey, Mirny, Leonid A
Published 2017

Iterative correction of Hi-C data reveals hallmarks of chromosome organization

by Fudenberg, Geoffrey, McCord, Rachel P., Naumova, Natalia, Goloborodko, Anton, Lajoie, Bryan R, Dekker, Job, Imakaev, Maksim Viktorovich, Mirny, Leonid A.
Published 2015

SMC complexes differentially compact mitotic chromosomes according to genomic context

by Schalbetter, Stephanie Andrea, Belton, Jon-Matthew, Miles, Catrina, Yu, Miao, Dekker, Job, Baxter, Jonathan, Goloborodko, Anton, Fudenberg, Geoffrey, Mirny, Leonid A
Published 2018

Two independent modes of chromatin organization revealed by cohesin removal

by Schwarzer, Wibke, Abdennur, Nezar, Goloborodko, Anton, Pekowska, Aleksandra, Fudenberg, Geoffrey, Loe-Mie, Yann, Fonseca, Nuno A, Huber, Wolfgang, Haering, Christian H., Mirny, Leonid A, Spitz, Francois
Published 2020

Super-resolution imaging reveals distinct chromatin folding for different epigenetic states

by Boettiger, Alistair N., Bintu, Bogdan, Moffitt, Jeffrey R., Wang, Siyuan, Beliveau, Brian J., Wu, Chao-ting, Zhuang, Xiaowei, Fudenberg, Geoffrey, Imakaev, Maksim Viktorovich, Mirny, Leonid A
Published 2017

Cohesin-dependent globules and heterochromatin shape 3D genome architecture in S. pombe

by Mizuguchi, Takeshi, Fudenberg, Geoffrey, Mehta, Sameet, Belton, Jon-Matthew, Taneja, Nitika, Folco, Hernan Diego, FitzGerald, Peter, Dekker, Job, Mirny, Leonid A., Barrowman, Jemima, Grewal, Shiv I. S.
Published 2016

Highly structured homolog pairing reflects functional organization of the Drosophila genome

by AlHaj Abed, Jumana, Erceg, Jelena, Goloborodko, Anton, Nguyen, Son C., McCole, Ruth B., Saylor, Wren, Fudenberg, Geoffrey, Lajoie, Bryan R., Dekker, Job, Mirny, Leonid A., Wu, C.-ting, Goloborodko
Published 2020

Molecular basis of CTCF binding polarity in genome folding

by Nora, Elphège P, Caccianini, Laura, Fudenberg, Geoffrey, So, Kevin, Kameswaran, Vasumathi, Nagle, Abigail, Uebersohn, Alec, Hajj, Bassam, Saux, Agnès Le, Coulon, Antoine, Mirny, Leonid A, Pollard, Katherine S, Dahan, Maxime, Bruneau, Benoit G
Published 2021

Genome-wide Maps of Nuclear Lamina Interactions in Single Human Cells

by Kind, Jop, Pagie, Ludo, de Vries, Sandra S, Nahidiazar, Leila, Dey, Siddharth S, Bienko, Magda, Zhan, Ye, Lajoie, Bryan, de Graaf, Carolyn A, Amendola, Mario, Jalink, Kees, Dekker, Job, van Oudenaarden, Alexander, van Steensel, Bas, Fudenberg, Geoffrey, Imakaev, Maksim Viktorovich, Mirny, Leonid A
Published 2017

The genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos

by Erceg, Jelena, AlHaj Abed, Jumana, Goloborodko, Anton, Lajoie, Bryan R., Fudenberg, Geoffrey, Abdennur, Nezar Alexander, Imakaev, Maksim Viktorovich, McCole, Ruth B., Nguyen, Son C., Saylor, Wren, Joyce, Eric F., Senaratne, T. Niroshini, Hannan, Mohammed A., Nir, Guy, Dekker, Job, Mirny, Leonid A, Wu, C.-ting
Published 2020