STAG2 regulates interferon signaling in melanoma via enhancer loop reprogramming

by Boland, G.M, Cai, L., Chen, J., Chu, Z., Feng, A., Flaherty, K.T, Frederick, D.T, Geng, S., Georgopoulos, K., Gu, L., Hu, Y., Huang, M., Li, M., Liu, D., Niu, Z., Piris, A., Qi, Y., Shen, C.-H, Shi, Y., Specht, E., Sullivan, R.J, Teng, D., Yoshida, T., Zhang, X., Zheng, B.
Published 2022

Systematic identification of signaling pathways with potential to confer anticancer drug resistance

by Martz, C. A., Ottina, Kathleen, Singleton, K. R., Jasper, J. S., Wardell, S. E., Peraza-Penton, A., Anderson, G. R., Winter, P. S., Alley, H. M., Kwong, L. N., Cooper, Z. A., Tetzlaff, M., Chen, P.-L, Rathmell, J. C., Flaherty, K. T., Wargo, J. A., McDonnell, D. P., Wood, K. C., Wang, Tim, Sabatini, David
Published 2015

Lung tissue shows divergent gene expression between chronic obstructive pulmonary disease and idiopathic pulmonary fibrosis

by Barwick, L., Brown, K.K, Castaldi, P.J, Chase, R.P, Cho, M.H, Criner, G., DeMeo, D.L, Flaherty, K., Ghosh, A.J, Hersh, C.P, Hobbs, B.D, Limper, A.H, Martinez, F.J, McGoldrick, D., Moll, M., Morrow, J., NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Saferali, A., Sciurba, F., Silverman, E.K, Wise, R., Xu, Z., Yun, J.H, Ziniti, J.
Published 2022

Combined tumor and immune signals from genomes or transcriptomes predict outcomes of checkpoint inhibition in melanoma

by Aguet, F., Arniella, M.B, Barzily-Rokni, M., Blackmon, S.M, Blaum, E.M, Boland, G.M, Carrot-Zhang, J., Chen, J.H, Duncan, L.M, Elagina, L., Flaherty, K.T, Frederick, D.T, Freeman, S.S, Gabriel, S., Getz, G., Gonye, A.L.K, Gushterova, I., Ha, G., Hacohen, N., Hammond, M.R, Jiao, Y.J, Kim, J., LaSalle, T.J, Lawrence, D.P, Leshchiner, I., Lin, Z., Livitz, D., Meyerson, M., Ravi, A., Rosebrock, D., Sade-Feldman, M., Sharova, T., Spiro, O.G, Stemmer-Rachamimov, A.O, Stewart, C., Sullivan, R.J, Vitzthum von Eckstaedt, H.C, Wargo, J.A, Yizhak, K.
Published 2022

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq

by Tirosh, I., Izar, B., Treacy, D., Trombetta, J. J., Rotem, A., Rodman, C., Lian, C., Murphy, G., Fallahi-Sichani, M., Dutton-Regester, K., Lin, J.-R, Cohen, O., Shah, P., Lu, D., Villani, A.-C, Andreev, A. Y., Van Allen, E. M., Bertagnolli, M., Sorger, P. K., Sullivan, R. J., Flaherty, K. T., Frederick, D. T., Jane-Valbuena, J., Rozenblatt-Rosen, O., Prakadan, Sanjay, Wadsworth, Marc Havens, Genshaft, Alex S., Hughes, Travis K., Ziegler, Carly, Kazer, Samuel Weisgurt, Gaillard de Saint Germain, Alethe, Kolb, Kellie Elizabeth, Johannessen, Cory M., Yoon, Clifford H., Shalek, Alexander K, Regev, Aviv, Garraway, Levi A.
Published 2017

Detection and Early Referral of Patients With Interstitial Lung Abnormalities: An Expert Survey Initiative

by Abtin, F., Abtin, F.G, Antoniou, K., Blackwell, T., Brown, K., Chung, J., Corte, T., Corte, T.J, Crestani, B., Crossno, P., Culver, D., de Andrade, J., de Andrade, J.A, Deveraj, A., Flaherty, K., Goldin, J.G, Gudmundsson, G., Hatabu, H., Hunninghake, G.M, ILA Study Group, Jacob, J., Johannson, K.A, Johansson, K., Kadoch, M.A, Kanne, J., Kazerooni, E., Kolb, M., Kolb, M.R, Kropski, J.A, Lazarus, H.M, Lynch, D., Lynch, D.A, Maher, T., Martinez, F., Morais, A., Nathan, S.D, Noth, I., Oldham, J., Oldham, J.M, Podolanczuk, A., Poletti, V., Ravaglia, C., Renzoni, E., Richeldi, L., Rosas, I.O, Rubin, G., Ryerson, C., Sahoo, D., Spagnolo, P., Strek, M.E, Suh, R., Sverzellati, N., Tomassetti, S., Valeyre, D., Walsh, S., Washko, G., Washko, G.R, Wells, A.U, White, E.S, Yadav, R.
Published 2022