Establishing Genotype-to-Phenotype Relationships in Bacteria Causing Hospital-Acquired Pneumonia: A Prelude to the Application of Clinical Metagenomics

by Etienne Ruppé, Abdessalam Cherkaoui, Vladimir Lazarevic, Stéphane Emonet, Jacques Schrenzel
Published 2017-11-01

Relationship between the composition of the intestinal microbiota and the tracheal and intestinal colonization by opportunistic pathogens in intensive care patients.

by Candice Fontaine, Laurence Armand-Lefèvre, Mélanie Magnan, Anissa Nazimoudine, Jean-François Timsit, Etienne Ruppé
Published 2020-01-01

Clinical metagenomics of bone and joint infections: a proof of concept study

by Etienne Ruppé, Vladimir Lazarevic, Myriam Girard, William Mouton, Tristan Ferry, Frédéric Laurent, Jacques Schrenzel
Published 2017-08-01

Detection of Bacterial Pathogens from Broncho-Alveolar Lavage by Next-Generation Sequencing

by Stefano Leo, Nadia Gaïa, Etienne Ruppé, Stephane Emonet, Myriam Girard, Vladimir Lazarevic, Jacques Schrenzel
Published 2017-09-01

CTX-M β-Lactamases in Escherichia coli from Community-acquired Urinary Tract Infections, Cambodia

by Etienne Ruppé, Sopheak Hem, Sovannarith Lath, Valérie Gautier, Frédéric Ariey, Jean-Louis Sarthou, Didier Monchy, Guillaume Arlet
Published 2009-05-01

Is the term “anti-anaerobic” still relevant?

by Paul-Louis Woerther, Camille d’Humières, Xavier Lescure, Luc Dubreuil, Christophe Rodriguez, François Barbier, Vincent Fihman, Etienne Ruppé
Published 2021-01-01

Acquisition of plasmid-mediated cephalosporinase producing Enterobacteriaceae after a travel to the tropics.

by Florian Lorme, Naouale Maataoui, Emilie Rondinaud, Marina Esposito-Farèse, Olivier Clermont, Etienne Ruppe, Guillaume Arlet, Nathalie Genel, VOYAG-R study group, Sophie Matheron, Antoine Andremont, Laurence Armand-Lefevre
Published 2018-01-01

When Bacterial Culture Fails, Metagenomics Can Help: A Case of Chronic Hepatic Brucelloma Assessed by Next-Generation Sequencing

by Vladimir Lazarevic, Nadia Gaïa, Myriam Girard, Stefano Leo, Abdessalam Cherkaoui, Gesuele Renzi, Stéphane Emonet, Sharon Jamme, Etienne Ruppé, Sandrine Vijgen, Laura Rubbia-Brandt, Christian Toso, Jacques Schrenzel, Jacques Schrenzel
Published 2018-07-01

Two original observations concerning bacterial infections in COVID-19 patients hospitalized in intensive care units during the first wave of the epidemic in France.

by Camille d'Humières, Juliette Patrier, Brice Lortat-Jacob, Alexy Tran-Dinh, Lotfi Chemali, Naouale Maataoui, Emilie Rondinaud, Etienne Ruppé, Charles Burdet, Stéphane Ruckly, Philippe Montravers, Jean-François Timsit, Laurence Armand-Lefevre
Published 2021-01-01

In-depth resistome analysis by targeted metagenomics

by Val F. Lanza, Fernando Baquero, José Luís Martínez, Ricardo Ramos-Ruíz, Bruno González-Zorn, Antoine Andremont, Antonio Sánchez-Valenzuela, Stanislav Dusko Ehrlich, Sean Kennedy, Etienne Ruppé, Willem van Schaik, Rob J. Willems, Fernando de la Cruz, Teresa M. Coque
Published 2018-01-01

Endocarditis caused by Thalassospira sp.

by Laurène Deconinck, Rémi Gschwind, Marie Petitjean, Signara Gueye, Véronique Leflon-Guibout, Naouale Maataoui, Emilie Rondinaud, Augustin Suard, Katell Gallais, Rainui Richaud, Adeline Fuchs, Bernard Iung, Soleiman Alkhoder, Sophie Ismaël, Julia Herrou, Héloïse Prié, Laurence Armand-Lefèvre, Camille d’Humières, Etienne Ruppé
Published 2021-01-01

The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing techno...

by Alexandre Angers-Loustau, Mauro Petrillo, Johan Bengtsson-Palme, Thomas Berendonk, Burton Blais, Kok-Gan Chan, Teresa M. Coque, Paul Hammer, Stefanie Heß, Dafni M. Kagkli, Carsten Krumbiegel, Val F. Lanza, Jean-Yves Madec, Thierry Naas, Justin O'Grady, Valentina Paracchini, John W.A. Rossen, Etienne Ruppé, Jessica Vamathevan, Vittorio Venturi, Guy Van den Eede
Published 2018-04-01

The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing techno...

by Alexandre Angers-Loustau, Mauro Petrillo, Johan Bengtsson-Palme, Thomas Berendonk, Burton Blais, Kok-Gan Chan, Teresa M. Coque, Paul Hammer, Stefanie Heß, Dafni M. Kagkli, Carsten Krumbiegel, Val F. Lanza, Jean-Yves Madec, Thierry Naas, Justin O'Grady, Valentina Paracchini, John W.A. Rossen, Etienne Ruppé, Jessica Vamathevan, Vittorio Venturi, Guy Van den Eede
Published 2018-12-01