Quantification and Classification of E. coli Proteome Utilization and Unused Protein Costs across Environments.

by Edward J O'Brien, Jose Utrilla, Bernhard O Palsson
Published 2016-06-01

COBRAme: A computational framework for genome-scale models of metabolism and gene expression.

by Colton J Lloyd, Ali Ebrahim, Laurence Yang, Zachary A King, Edward Catoiu, Edward J O'Brien, Joanne K Liu, Bernhard O Palsson
Published 2018-07-01

Multi-omic data integration enables discovery of hidden biological regularities

by Ali Ebrahim, Elizabeth Brunk, Justin Tan, Edward J. O'Brien, Donghyuk Kim, Richard Szubin, Joshua A. Lerman, Anna Lechner, Anand Sastry, Aarash Bordbar, Adam M. Feist, Bernhard O. Palsson
Published 2016-10-01

Laboratory evolution reveals a two-dimensional rate-yield tradeoff in microbial metabolism.

by Chuankai Cheng, Edward J O'Brien, Douglas McCloskey, Jose Utrilla, Connor Olson, Ryan A LaCroix, Troy E Sandberg, Adam M Feist, Bernhard O Palsson, Zachary A King
Published 2019-06-01

The genetic basis for adaptation of model-designed syntrophic co-cultures.

by Colton J Lloyd, Zachary A King, Troy E Sandberg, Ying Hefner, Connor A Olson, Patrick V Phaneuf, Edward J O'Brien, Jon G Sanders, Rodolfo A Salido, Karenina Sanders, Caitriona Brennan, Gregory Humphrey, Rob Knight, Adam M Feist
Published 2019-03-01