Adaptations of Escherichia coli strains to oxidative stress are reflected in properties of their structural proteomes

by Nathan Mih, Jonathan M. Monk, Xin Fang, Edward Catoiu, David Heckmann, Laurence Yang, Bernhard O. Palsson
Published 2020-04-01

COBRAme: A computational framework for genome-scale models of metabolism and gene expression.

by Colton J Lloyd, Ali Ebrahim, Laurence Yang, Zachary A King, Edward Catoiu, Edward J O'Brien, Joanne K Liu, Bernhard O Palsson
Published 2018-07-01

Genome-scale metabolic reconstructions of multiple Salmonella strains reveal serovar-specific metabolic traits

by Yara Seif, Erol Kavvas, Jean-Christophe Lachance, James T. Yurkovich, Sean-Paul Nuccio, Xin Fang, Edward Catoiu, Manuela Raffatellu, Bernhard O. Palsson, Jonathan M. Monk
Published 2018-09-01

Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance

by Erol S. Kavvas, Edward Catoiu, Nathan Mih, James T. Yurkovich, Yara Seif, Nicholas Dillon, David Heckmann, Amitesh Anand, Laurence Yang, Victor Nizet, Jonathan M. Monk, Bernhard O. Palsson
Published 2018-10-01