Nitrogen as the major factor influencing gene expression in Yarrowia lipolytica

by Piotr Hapeta, Eduard J. Kerkhoven, Zbigniew Lazar
Published 2020-09-01

Investigating the Influence of Glycerol on the Utilization of Glucose in Yarrowia lipolytica Using RNA-Seq-Based Transcriptomics

by Patrice Lubuta, Mhairi Workman, Eduard J. Kerkhoven, Christopher T. Workman
Published 2019-12-01

Dynamic modelling under uncertainty: the case of Trypanosoma brucei energy metabolism.

by Fiona Achcar, Eduard J Kerkhoven, SilicoTryp Consortium, Barbara M Bakker, Michael P Barrett, Rainer Breitling
Published 2012-01-01

RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor.

by Hao Wang, Simonas Marcišauskas, Benjamín J Sánchez, Iván Domenzain, Daniel Hermansson, Rasmus Agren, Jens Nielsen, Eduard J Kerkhoven
Published 2018-10-01

Reconstruction of a Genome-Scale Metabolic Model of <i>Streptomyces albus</i> J1074: Improved Engineering Strategies in Natural Product Synthesis

by Cheewin Kittikunapong, Suhui Ye, Patricia Magadán-Corpas, Álvaro Pérez-Valero, Claudio J. Villar, Felipe Lombó, Eduard J. Kerkhoven
Published 2021-05-01

Proteome analysis of xylose metabolism in Rhodotorula toruloides during lipid production

by Ievgeniia A. Tiukova, Jule Brandenburg, Johanna Blomqvist, Sabine Sampels, Nils Mikkelsen, Morten Skaugen, Magnus Ø. Arntzen, Jens Nielsen, Mats Sandgren, Eduard J. Kerkhoven
Published 2019-06-01

Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production

by Snorre Sulheim, Tjaša Kumelj, Dino van Dissel, Ali Salehzadeh-Yazdi, Chao Du, Gilles P. van Wezel, Kay Nieselt, Eivind Almaas, Alexander Wentzel, Eduard J. Kerkhoven
Published 2020-09-01

Handling uncertainty in dynamic models: the pentose phosphate pathway in Trypanosoma brucei.

by Eduard J Kerkhoven, Fiona Achcar, Vincent P Alibu, Richard J Burchmore, Ian H Gilbert, Maciej Trybiło, Nicole N Driessen, David Gilbert, Rainer Breitling, Barbara M Bakker, Michael P Barrett
Published 2013-01-01

A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

by Hongzhong Lu, Feiran Li, Benjamín J. Sánchez, Zhengming Zhu, Gang Li, Iván Domenzain, Simonas Marcišauskas, Petre Mihail Anton, Dimitra Lappa, Christian Lieven, Moritz Emanuel Beber, Nikolaus Sonnenschein, Eduard J. Kerkhoven, Jens Nielsen
Published 2019-08-01

Author Correction: A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

by Hongzhong Lu, Feiran Li, Benjamín J. Sánchez, Zhengming Zhu, Gang Li, Iván Domenzain, Simonas Marcišauskas, Petre Mihail Anton, Dimitra Lappa, Christian Lieven, Moritz Emanuel Beber, Nikolaus Sonnenschein, Eduard J. Kerkhoven, Jens Nielsen
Published 2020-10-01

Leucine Biosynthesis Is Involved in Regulating High Lipid Accumulation in Yarrowia lipolytica

by Eduard J. Kerkhoven, Young-Mo Kim, Siwei Wei, Carrie D. Nicora, Thomas L. Fillmore, Samuel O. Purvine, Bobbie-Jo Webb-Robertson, Richard D. Smith, Scott E. Baker, Thomas O. Metz, Jens Nielsen, Sang Yup Lee
Published 2017-06-01

Regulation of Yeast-to-Hyphae Transition in Yarrowia lipolytica

by Kyle R. Pomraning, Erin L. Bredeweg, Eduard J. Kerkhoven, Kerrie Barry, Sajeet Haridas, Hope Hundley, Kurt LaButti, Anna Lipzen, Mi Yan, Jon K. Magnuson, Blake A. Simmons, Igor V. Grigoriev, Jens Nielsen, Scott E. Baker
Published 2018-12-01

Probing the metabolic network in bloodstream-form Trypanosoma brucei using untargeted metabolomics with stable isotope labelled glucose.

by Darren J Creek, Muriel Mazet, Fiona Achcar, Jana Anderson, Dong-Hyun Kim, Ruwida Kamour, Pauline Morand, Yoann Millerioux, Marc Biran, Eduard J Kerkhoven, Achuthanunni Chokkathukalam, Stefan K Weidt, Karl E V Burgess, Rainer Breitling, David G Watson, Frédéric Bringaud, Michael P Barrett
Published 2015-03-01