Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom

by Durand, Neva C, Robinson, James T, Shamim, Muhammad S, Machol, Ido, Aiden, Erez Lieberman, Lander, Eric Steven, Mesirov, Jill P.
Published 2016

Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

by Durand, Neva C, Shamim, Muhammad S, Machol, Ido, Rao, Suhas S.P, Huntley, Miriam H, Aiden, Erez Lieberman, Lander, Eric Steven
Published 2017

De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds

by Dudchenko, Olga, Batra, Sanjit S., Omer, Arina D., Hoeger, Marie, Durand, Neva C., Shamim, Muhammad S., Machol, Ido, Aiden, Aviva Presser, Aiden, Erez Lieberman, Nyquist, Sarah Kate, Lander, Eric Steven
Published 2018

Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture

by Darrow, Emily M., Huntley, Miriam H., Dudchenko, Olga, Stamenova, Elena K., Durand, Neva C., Sun, Zhuo, Huang, Su-Chen, Sanborn, Adrian L., Machol, Ido, Shamim, Muhammad, Seberg, Andrew P., Chadwick, Brian P., Aiden, Erez Lieberman, Lander, Eric Steven
Published 2018

Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes

by Sanborn, Adrian L., Rao, Suhas S. P., Huang, Su-Chen, Durand, Neva C., Huntley, Miriam H., Jewett, Andrew I., Bochkov, Ivan D., Chinnappan, Dharmaraj, Cutkosky, Ashok, Li, Jian, Geeting, Kristopher P., Gnirke, Andreas, Melnikov, Alexandre, McKenna, Doug, Stamenova, Elena K., Aiden, Erez Lieberman, Lander, Eric Steven
Published 2017

Activity-by-contact model of enhancer-promoter regulation from thousands of CRISPR perturbations

by Fulco, Charles P., Nasser, Joseph, Jones, Thouis R., Munson, Glen, Bergman, Drew T., Subramanian, Vidya, Grossman, Sharon Rachel, Anyoha, Rockwell, Doughty, Benjamin R., Patwardhan, Tejal A., Nguyen, Tung Hoang, Kane, Michael A., Perez, Elizabeth M., Durand, Neva C., Lareau, Caleb A., Stamenova, Elena K., Aiden, Erez Lieberman, Lander, Eric Steven, Engreitz, Jesse Michael
Published 2021