Comparative Genomics Reveals the Regulatory Complexity of Bifidobacterial Arabinose and Arabino-Oligosaccharide Utilization

by Aleksandr A. Arzamasov, Douwe van Sinderen, Dmitry A. Rodionov, Dmitry A. Rodionov
Published 2018-04-01

Binary Metabolic Phenotypes and Phenotype Diversity Metrics for the Functional Characterization of Microbial Communities

by Stanislav N. Iablokov, Pavel S. Novichkov, Andrei L. Osterman, Dmitry A. Rodionov, Dmitry A. Rodionov
Published 2021-05-01

Transcriptional Regulation of Carbohydrate Utilization Pathways in the Bifidobacterium Genus

by Matvei S Khoroshkin, Semen A Leyn, Douwe eVan Sinderen, Dmitry A Rodionov, Dmitry A Rodionov
Published 2016-02-01

Genomic Reconstruction of Carbohydrate Utilization Capacities in Microbial-Mat Derived Consortia

by Semen A. Leyn, Semen A. Leyn, Yukari Maezato, Margaret F. Romine, Dmitry A. Rodionov, Dmitry A. Rodionov
Published 2017-07-01

Carbohydrates great and small, from dietary fiber to sialic acids: How glycans influence the gut microbiome and affect human health

by Joanna K Coker, Oriane Moyne, Dmitry A. Rodionov, Karsten Zengler
Published 2021-01-01

Dietary Emulsifier Sodium Stearoyl Lactylate Alters Gut Microbiota in vitro and Inhibits Bacterial Butyrate Producers

by Lisa Elmén, Jaime E. Zlamal, David A. Scott, Ryan B. Lee, Daniel J. Chen, Alexandre R. Colas, Dmitry A. Rodionov, Dmitry A. Rodionov, Scott N. Peterson
Published 2020-05-01

B Vitamins and Their Role in Immune Regulation and Cancer

by Christine Tara Peterson, Dmitry A. Rodionov, Andrei L. Osterman, Scott N. Peterson
Published 2020-11-01

Community Metabolic Interactions, Vitamin Production and Prebiotic Potential of Medicinal Herbs Used for Immunomodulation

by Christine T. Peterson, Stanislav N. Iablokov, Stanislav N. Iablokov, Sasha Uchitel, Deepak Chopra, Deepak Chopra, Josue Perez-Santiago, Dmitry A. Rodionov, Dmitry A. Rodionov, Scott N. Peterson, Scott N. Peterson
Published 2021-02-01

Transcriptional regulation of the carbohydrate utilization network in Thermotoga maritima

by Dmitry A Rodionov, Dmitry A Rodionov, Irina A Rodionova, Xiaoqing eLi, Dmitry A Ravcheev, Dmitry A Ravcheev, Yekaterina eTarasova, Vasiliy A Portnoy, Karsten eZengler, Andrei L Osterman
Published 2013-08-01

Dissimilatory metabolism of nitrogen oxides in bacteria: comparative reconstruction of transcriptional networks.

by Dmitry A Rodionov, Inna L Dubchak, Adam P Arkin, Eric J Alm, Mikhail S Gelfand
Published 2005-10-01

Comparative genomics and evolution of regulons of the LacI-family transcription factors

by Dmitry A Ravcheev, Matvei S Khoroshkin, Olga N Laikova, Olga V Tsoy, Natalia V Sernova, Svetlana A Petrova, Aleksandra B Rakhmaninova, Pavel S Novichkov, Mikhail S Gelfand, Mikhail S Gelfand, Dmitry A Rodionov, Dmitry A Rodionov
Published 2014-06-01

Metabolic Phenotypes as Potential Biomarkers for Linking Gut Microbiome With Inflammatory Bowel Diseases

by Stanislav N. Iablokov, Stanislav N. Iablokov, Natalia S. Klimenko, Natalia S. Klimenko, Daria A. Efimova, Tatiana Shashkova, Tatiana Shashkova, Pavel S. Novichkov, Pavel S. Novichkov, Dmitry A. Rodionov, Dmitry A. Rodionov, Alexander V. Tyakht, Alexander V. Tyakht
Published 2021-01-01

B-Vitamin Sharing Promotes Stability of Gut Microbial Communities

by Vandana Sharma, Dmitry A. Rodionov, Dmitry A. Rodionov, Semen A. Leyn, Semen A. Leyn, David Tran, Stanislav N. Iablokov, Stanislav N. Iablokov, Hua Ding, Daniel A. Peterson, Andrei L. Osterman, Scott N. Peterson
Published 2019-07-01

Micronutrient Requirements and Sharing Capabilities of the Human Gut Microbiome

by Dmitry A. Rodionov, Dmitry A. Rodionov, Aleksandr A. Arzamasov, Aleksandr A. Arzamasov, Matvei S. Khoroshkin, Stanislav N. Iablokov, Stanislav N. Iablokov, Semen A. Leyn, Semen A. Leyn, Scott N. Peterson, Pavel S. Novichkov, Andrei L. Osterman
Published 2019-06-01

Computational reconstruction of iron- and manganese-responsive transcriptional networks in alpha-proteobacteria.

by Dmitry A Rodionov, Mikhail S Gelfand, Jonathan D Todd, Andrew R J Curson, Andrew W B Johnston
Published 2006-12-01

Comparative genomics and functional analysis of rhamnose catabolic pathways and regulons in Bacteria

by Irina A Rodionova, Xiaoqing eLi, Vera eThiel, Sergey eStolyar, Krista eStanton, James K Fredrickson, Donald A Bryant, Donald A Bryant, Andrei L Osterman, Aaron A Best, Dmitry A Rodionov, Dmitry A Rodionov
Published 2013-12-01

Comparative genomics of transcriptional regulation of methionine metabolism in Proteobacteria.

by Semen A Leyn, Inna A Suvorova, Tatiana D Kholina, Sofia S Sherstneva, Pavel S Novichkov, Mikhail S Gelfand, Dmitry A Rodionov
Published 2014-01-01

Prebiotic Potential of Culinary Spices Used to Support Digestion and Bioabsorption

by Christine T. Peterson, Dmitry A. Rodionov, Stanislav N. Iablokov, Meredith A. Pung, Deepak Chopra, Paul J. Mills, Scott N. Peterson
Published 2019-01-01

Transport of magnesium by a bacterial Nramp-related gene.

by Jung-Ho Shin, Catherine A Wakeman, Jonathan R Goodson, Dmitry A Rodionov, Benjamin G Freedman, Ryan S Senger, Wade C Winkler
Published 2014-06-01

Identification of a transcription factor, PunR, that regulates the purine and purine nucleoside transporter punC in E. coli

by Irina A. Rodionova, Ye Gao, Anand Sastry, Ying Hefner, Hyun Gyu Lim, Dmitry A. Rodionov, Milton H. Saier, Bernhard O. Palsson
Published 2021-08-01