Methods for integration of transcriptomic data in genome-scale metabolic models

by Min Kyung Kim, Desmond S. Lun
Published 2014-08-01

Assessment of transcriptomic constraint-based methods for central carbon flux inference.

by Siddharth Bhadra-Lobo, Min Kyung Kim, Desmond S Lun
Published 2020-01-01

Statistical modeling of STR capillary electrophoresis signal

by Slim Karkar, Lauren E. Alfonse, Catherine M. Grgicak, Desmond S. Lun
Published 2019-12-01

E-Flux2 and SPOT: Validated Methods for Inferring Intracellular Metabolic Flux Distributions from Transcriptomic Data.

by Min Kyung Kim, Anatoliy Lane, James J Kelley, Desmond S Lun
Published 2016-01-01

Assessment of transcriptomic constraint-based methods for central carbon flux inference

by Siddharth Bhadra-Lobo, Min Kyung Kim, Desmond S. Lun, Rajagopal Subramanyam
Published 2020-01-01

Equivalent T cell epitope promiscuity in ecologically diverse human pathogens.

by Kirsten E Wiens, Harish Swaminathan, Richard Copin, Desmond S Lun, Joel D Ernst
Published 2013-01-01

Four model variants within a continuous forensic DNA mixture interpretation framework: Effects on evidential inference and reporting.

by Harish Swaminathan, Muhammad O Qureshi, Catherine M Grgicak, Ken Duffy, Desmond S Lun
Published 2018-01-01

Correction: Inferring Carbon Sources from Gene Expression Profiles Using Metabolic Flux Models

by Aaron Brandes, Desmond S. Lun, Kuhn Ip, Jeremy Zucker, Caroline Colijn, Brian Weiner, James E. Galagan
Published 2012-01-01

Inferring carbon sources from gene expression profiles using metabolic flux models.

by Aaron Brandes, Desmond S Lun, Kuhn Ip, Jeremy Zucker, Caroline Colijn, Brian Weiner, James E Galagan
Published 2012-01-01

Correction: Inferring Carbon Sources from Gene Expression Profiles Using Metabolic Flux Models.

by Aaron Brandes, Desmond S. Lun, Kuhn Ip, Jeremy Zucker, Caroline Colijn, Brian Weiner, James E. Galagan
Published 2012-01-01

Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production.

by Caroline Colijn, Aaron Brandes, Jeremy Zucker, Desmond S Lun, Brian Weiner, Maha R Farhat, Tan-Yun Cheng, D Branch Moody, Megan Murray, James E Galagan
Published 2009-08-01

Staphylococcus aureus Coordinates Leukocidin Expression and Pathogenesis by Sensing Metabolic Fluxes via RpiRc

by Divya Balasubramanian, Elizabeth A. Ohneck, Jessica Chapman, Andy Weiss, Min Kyung Kim, Tamara Reyes-Robles, Judy Zhong, Lindsey N. Shaw, Desmond S. Lun, Beatrix Ueberheide, Bo Shopsin, Victor J. Torres
Published 2016-06-01

Staphylococcus aureus Responds to the Central Metabolite Pyruvate To Regulate Virulence

by Lamia Harper, Divya Balasubramanian, Elizabeth A. Ohneck, William E. Sause, Jessica Chapman, Bryan Mejia-Sosa, Tenzin Lhakhang, Adriana Heguy, Aristotelis Tsirigos, Beatrix Ueberheide, Jeffrey M. Boyd, Desmond S. Lun, Victor J. Torres, Anthony R. Richardson, Paul Dunman
Published 2018-01-01

Joint base-calling of two DNA sequences with factor graphs

by Shi, Xiaomeng, Ph. D. Massachusetts Institute of Technology
Published 2009