Towards Translational Epidemiology: Next-Generation Sequencing and Phylogeography as Epidemiological Mainstays

by Crystal M. Hepp
Published 2019-06-01

Contrasted patterns of evolution of the LINE-1 retrotransposon in perissodactyls: the history of a LINE-1 extinction

by Akash Sookdeo, Crystal M. Hepp, Stéphane Boissinot
Published 2018-03-01

Sample pooling methods for efficient pathogen screening: Practical implications.

by Tara N Furstenau, Jill H Cocking, Crystal M Hepp, Viacheslav Y Fofanov
Published 2020-01-01

Identifying genetic relationships among tarsier populations in the islands of Bunaken National Park and mainland Sulawesi.

by Thalita Christiani Pingkan Sumampow, Myron Shekelle, Paul Beier, Faith M Walker, Crystal M Hepp
Published 2020-01-01

Range-wide genetic analysis of Dermacentor variabilis and its Francisella-like endosymbionts demonstrates phylogeographic concordance between both taxa

by Emily L. Kaufman, Nathan E. Stone, Glen A. Scoles, Crystal M. Hepp, Joseph D. Busch, David M. Wagner
Published 2018-05-01

Characterization of neonatal opioid withdrawal syndrome in Arizona from 2010-2017.

by Emery R Eaves, Jarrett Barber, Ryann Whealy, Sara A Clancey, Rita Wright, Jill Hager Cocking, Joseph Spadafino, Crystal M Hepp
Published 2021-01-01

Temporal phylogeography of Yersinia pestis in Madagascar: Insights into the long-term maintenance of plague.

by Amy J Vogler, Voahangy Andrianaivoarimanana, Sandra Telfer, Carina M Hall, Jason W Sahl, Crystal M Hepp, Heather Centner, Genevieve Andersen, Dawn N Birdsell, Lila Rahalison, Roxanne Nottingham, Paul Keim, David M Wagner, Minoarisoa Rajerison
Published 2017-09-01

Genotyping of Burkholderia mallei from an outbreak of glanders in Bahrain suggests multiple introduction events.

by Holger C Scholz, Talima Pearson, Heidie Hornstra, Michaela Projahn, Rahime Terzioglu, Renate Wernery, Enrico Georgi, Julia M Riehm, David M Wagner, Paul S Keim, Marina Joseph, Bobby Johnson, Joerg Kinne, Shanti Jose, Crystal M Hepp, Angela Witte, Ulrich Wernery
Published 2014-09-01

Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever

by David M. Engelthaler, Chandler C. Roe, Crystal M. Hepp, Marcus Teixeira, Elizabeth M. Driebe, James M. Schupp, Lalitha Gade, Victor Waddell, Kenneth Komatsu, Eduardo Arathoon, Heidi Logemann, George R. Thompson, Tom Chiller, Bridget Barker, Paul Keim, Anastasia P. Litvintseva
Published 2016-04-01

St. Louis Encephalitis Virus in the Southwestern United States: A Phylogeographic Case for a Multi-Variant Introduction Event

by Chase L. Ridenour, Chase L. Ridenour, Jill Cocking, Jill Cocking, Samuel Poidmore, Daryn Erickson, Breezy Brock, Michael Valentine, Chandler C. Roe, Chandler C. Roe, Steven J. Young, Jennifer A. Henke, Kim Y. Hung, Jeremy Wittie, Elene Stefanakos, Chris Sumner, Martha Ruedas, Vivek Raman, Nicole Seaton, William Bendik, Heidie M. Hornstra O’Neill, Krystal Sheridan, Krystal Sheridan, Heather Centner, Darrin Lemmer, Viacheslav Fofanov, Viacheslav Fofanov, Kirk Smith, James Will, John Townsend, Jeffrey T. Foster, Paul S. Keim, Paul S. Keim, David M. Engelthaler, Crystal M. Hepp, Crystal M. Hepp
Published 2021-06-01

Dating the Cryptococcus gattii Dispersal to the North American Pacific Northwest

by Chandler C. Roe, Jolene Bowers, Hanna Oltean, Emilio DeBess, Philippe J. Dufresne, Scott McBurney, David P. Overy, Bodo Wanke, Colleen Lysen, Tom Chiller, Wieland Meyer, George R. Thompson, Shawn R. Lockhart, Crystal M. Hepp, David M. Engelthaler, J. Andrew Alspaugh
Published 2018-01-01

Phylogenetic analysis of West Nile Virus in Maricopa County, Arizona: Evidence for dynamic behavior of strains in two major lineages in the American Southwest.

by Crystal M Hepp, Jill Hager Cocking, Michael Valentine, Steven J Young, Dan Damian, Kimberly E Samuels-Crow, Krystal Sheridan, Viacheslav Y Fofanov, Tara N Furstenau, Joseph D Busch, Daryn E Erickson, Ryan C Lancione, Kirk Smith, James Will, John Townsend, Paul S Keim, David M Engelthaler
Published 2018-01-01

Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity [version 2; peer review: 2 approved]

by Evan Bolyen, Matthew R. Dillon, Nicholas A. Bokulich, Jason T. Ladner, Brendan B. Larsen, Crystal M. Hepp, Darrin Lemmer, Jason W. Sahl, Andrew Sanchez, Chris Holdgraf, Chris Sewell, Aakash G. Choudhury, John Stachurski, Matthew McKay, Anthony Simard, David M. Engelthaler, Michael Worobey, Paul Keim, J. Gregory Caporaso
Published 2020-10-01

Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus.

by Elizabeth M Driebe, Jason W Sahl, Chandler Roe, Jolene R Bowers, James M Schupp, John D Gillece, Erin Kelley, Lance B Price, Talima R Pearson, Crystal M Hepp, Pius M Brzoska, Craig A Cummings, Manohar R Furtado, Paal S Andersen, Marc Stegger, David M Engelthaler, Paul S Keim
Published 2015-01-01

Pathogen to commensal? Longitudinal within-host population dynamics, evolution, and adaptation during a chronic >16-year Burkholderia pseudomallei infection.

by Talima Pearson, Jason W Sahl, Crystal M Hepp, Karthik Handady, Heidie Hornstra, Adam J Vazquez, Erik Settles, Mark Mayo, Mirjam Kaestli, Charles H D Williamson, Erin P Price, Derek S Sarovich, James M Cook, Spenser R Wolken, Richard A Bowen, Apichai Tuanyok, Jeffrey T Foster, Kevin P Drees, Timothy J Kidd, Scott C Bell, Bart J Currie, Paul Keim
Published 2020-03-01