Components of selection in the evolution of the influenza virus: linkage effects beat inherent selection.

by Christopher J R Illingworth, Ville Mustonen
Published 2012-12-01

Identifying selection in the within-host evolution of influenza using viral sequence data.

by Christopher J R Illingworth, Andrej Fischer, Ville Mustonen
Published 2014-07-01

Building a mechanistic mathematical model of hepatitis C virus entry.

by Mphatso Kalemera, Dilyana Mincheva, Joe Grove, Christopher J R Illingworth
Published 2019-03-01

A novel framework for inferring parameters of transmission from viral sequence data.

by Casper K Lumby, Nuno R Nene, Christopher J R Illingworth
Published 2018-10-01

High-Definition Reconstruction of Clonal Composition in Cancer

by Andrej Fischer, Ignacio Vázquez-García, Christopher J.R. Illingworth, Ville Mustonen
Published 2014-06-01

Inferring genome-wide recombination landscapes from advanced intercross lines: application to yeast crosses.

by Christopher J R Illingworth, Leopold Parts, Anders Bergström, Gianni Liti, Ville Mustonen
Published 2013-01-01

Single-cell RNA-seq reveals hidden transcriptional variation in malaria parasites

by Adam J Reid, Arthur M Talman, Hayley M Bennett, Ana R Gomes, Mandy J Sanders, Christopher J R Illingworth, Oliver Billker, Matthew Berriman, Mara KN Lawniczak
Published 2018-03-01

A de novo approach to inferring within-host fitness effects during untreated HIV-1 infection.

by Christopher J R Illingworth, Jayna Raghwani, David Serwadda, Nelson K Sewankambo, Merlin L Robb, Michael A Eller, Andrew R Redd, Thomas C Quinn, Katrina A Lythgoe
Published 2020-06-01

Population genomic and evolutionary modelling analyses reveal a single major QTL for ivermectin drug resistance in the pathogenic nematode, Haemonchus contortus

by Stephen R. Doyle, Christopher J. R. Illingworth, Roz Laing, David J. Bartley, Elizabeth Redman, Axel Martinelli, Nancy Holroyd, Alison A. Morrison, Andrew Rezansoff, Alan Tracey, Eileen Devaney, Matthew Berriman, Neil Sargison, James A. Cotton, John S. Gilleard
Published 2019-03-01

Rapid identification of genes controlling virulence and immunity in malaria parasites.

by Hussein M Abkallo, Axel Martinelli, Megumi Inoue, Abhinay Ramaprasad, Phonepadith Xangsayarath, Jesse Gitaka, Jianxia Tang, Kazuhide Yahata, Augustin Zoungrana, Hayato Mitaka, Arita Acharjee, Partha P Datta, Paul Hunt, Richard Carter, Osamu Kaneko, Ville Mustonen, Christopher J R Illingworth, Arnab Pain, Richard Culleton
Published 2017-07-01

The effective rate of influenza reassortment is limited during human infection.

by Ashley Sobel Leonard, Micah T McClain, Gavin J D Smith, David E Wentworth, Rebecca A Halpin, Xudong Lin, Amy Ransier, Timothy B Stockwell, Suman R Das, Anthony S Gilbert, Rob Lambkin-Williams, Geoffrey S Ginsburg, Christopher W Woods, Katia Koelle, Christopher J R Illingworth
Published 2017-02-01