A Profile Hidden Markov Model to investigate the distribution and frequency of LanB-encoding lantibiotic modification genes in the human oral and gut microbiome

by Calum J. Walsh, Caitriona M. Guinane, Paul W. O’ Toole, Paul D. Cotter
Published 2017-04-01

The probiotic L. casei LC-XCAL™ improves metabolic health in a diet-induced obesity mouse model without altering the microbiome

by Calum J. Walsh, Selena Healy, Paul W. O’Toole, Eileen F. Murphy, Paul D. Cotter
Published 2020-11-01

Genotypic and Phenotypic Characterization of Fecal Staphylococcus epidermidis Isolates Suggests Plasticity to Adapt to Different Human Body Sites

by Enriqueta Garcia-Gutierrez, Enriqueta Garcia-Gutierrez, Calum J. Walsh, Calum J. Walsh, Lizbeth Sayavedra, Teresa Diaz-Calvo, Dinesh Thapa, Patricia Ruas-Madiedo, Melinda J. Mayer, Paul D. Cotter, Paul D. Cotter, Arjan Narbad
Published 2020-04-01

The Lung Microbiome in Young Children with Cystic Fibrosis: A Prospective Cohort Study

by Barry Linnane, Aaron M. Walsh, Calum J. Walsh, Fiona Crispie, Orla O’Sullivan, Paul D. Cotter, Michael McDermott, Julie Renwick, Paul McNally
Published 2021-02-01

Dairy Products and Dairy-Processing Environments as a Reservoir of Antibiotic Resistance and Quorum-Quenching Determinants as Revealed through Functional Metagenomics

by Elena A. Alexa (Oniciuc), Calum J. Walsh, Laura M. Coughlan, Amal Awad, Cezara A. Simon, Lorena Ruiz, Fiona Crispie, Paul D. Cotter, Avelino Alvarez-Ordóñez
Published 2020-02-01

Evaluation of methods for the reduction of contaminating host reads when performing shotgun metagenomic sequencing of the milk microbiome

by Min Yap, Conor Feehily, Calum J. Walsh, Mark Fenelon, Eileen F. Murphy, Fionnuala M. McAuliffe, Douwe van Sinderen, Paul W. O’Toole, Orla O’Sullivan, Paul D. Cotter
Published 2020-12-01

The microbiome of deep-sea fish reveals new microbial species and a sparsity of antibiotic resistance genes

by Fergus W. J. Collins, Calum J. Walsh, Beatriz Gomez-Sala, Elena Guijarro-García, David Stokes, Klara B. Jakobsdóttir, Kristján Kristjánsson, Finlay Burns, Paul D. Cotter, Mary C. Rea, Colin Hill, R. Paul Ross
Published 2021-01-01