The genetic basis for individual differences in mRNA splicing and APOBEC1 editing activity in murine macrophages

by Hassan, Musa A., Saeij, Jeroen, Butty, Vincent L G, Jensen, Kirk D.
Published 2014

Polycomb Repressive Complex 2 Regulates Lineage Fidelity during Embryonic Stem Cell Differentiation

by Levine, Stuart S., Thornton, Seraphim R., Butty, Vincent L G, Boyer, Laurie Ann
Published 2014

Enhanced ER proteostasis and temperature differentially impact the mutational tolerance of influenza hemagglutinin

by Phillips, Angela Marie, Gonzalez, Luna O., Butty, Vincent L G, Shoulders, Matthew D.
Published 2020

Transcriptional and Linkage Analyses Identify Loci that Mediate the Differential Macrophage Response to Inflammatory Stimuli and Infection

by Hassan, Musa A., Jensen, Kirk D., Hu, Kenneth, Boedec, Erwan, Prins, Pjotr, Saeij, Jeroen, Butty, Vincent L G
Published 2016

Galectin-3 Regulates γ-Herpesvirus Specific CD8 T Cell Immunity

by Kaur, Manpreet, Kumar, Dhaneshwar, Butty, Vincent L G, Singh, Sudhakar, Esteban, Alexandre, Fink, Gerald R, Ploegh, Hidde, Sehrawat, Sharvan
Published 2020

Methods for time series analysis of RNA-seq data with application to human Th17 cell differentiation

by Aiho, Tarmo, Chen, Zhi, Salo, Verna, Tripathi, Subhash, Lahesmaa, Riitta, Lahdesmaki, Harri, Butty, Vincent L G, Burge, Christopher B
Published 2015

A Method for Selective Depletion of Zn(II) Ions from Complex Biological Media and Evaluation of Cellular Consequences of Zn(II) Deficiency

by Richardson, Christopher E. R., Cunden, Lisa Stephanie, Butty, Vincent L G, Nolan, Elizabeth Marie, Lippard, Stephen J., Shoulders, Matthew D.
Published 2020

Alternative RNA splicing in the endothelium mediated in part by Rbfox2 regulates the arterial response to low flow

by Kimble, Amy L., Murphy, Patrick A., Butty, Vincent L. G., Boutz, Paul, Begum, Shahinoor, Sharp, Phillip A., Burge, Christopher B., Hynes, Richard O.
Published 2018

Destabilized adaptive influenza variants critical for innate immune system escape are potentiated by host chaperones

by Phillips, Angela Marie, Ponomarenko, Anna, Butty, Vincent L G, Whittaker, Charles A., Moore, Christopher Lawrence, Shoulders, Matthew D., Chen, Kenny,Ph. D.Massachusetts Institute of Technology
Published 2020

Transcriptional Reversion of Cardiac Myocyte Fate During Mammalian Cardiac Regeneration

by O'Meara, C. C., Gladstone, R. A., Fomovsky, G. M., Gannon, J. B., Lee, R. T., Wamstad, Joseph, Butty, Vincent L G, Shrikumar, A., Boyer, Laurie Ann
Published 2018

Failed Progenitor Specification Underlies the Cardiopharyngeal Phenotypes in a Zebrafish Model of 22q11.2 Deletion Syndrome

by Guner-Ataman, Burcu, González-Rosa, Juan Manuel, Shah, Harsh N., Jeffrey, Spencer, Abrial, Maryline, Burns, C. Geoffrey, Burns, Caroline E., Butty, Vincent L G, Boyer, Laurie Ann
Published 2018

H2A.Z Acidic Patch Couples Chromatin Dynamics to Regulation of Gene Expression Programs during ESC Differentiation

by Subramanian, Vidya, Mazumder, Aprotim, Fields, Paul A., Torrey, Lillian, Levine, Stuart S., Bathe, Mark, Surface, Lauren Elizabeth, Alwan, Allison M., Thai, Kevin Kinh, Boyer, Laurie Ann, Butty, Vincent L G
Published 2013

Host proteostasis modulates influenza evolution

by McHugh, Sean M, Lin, Yu-Shan, Phillips, Angela Marie, Gonzalez, Luna O., Nekongo, Emmanuel E, Ponomarenko, Anna, Butty, Vincent L G, Levine, Stuart S., Mirny, Leonid A, Shoulders, Matthew D.
Published 2017

Geometry-dependent functional changes in iPSC-derived cardiomyocytes probed by functional imaging and RNA sequencing

by Gaublomme, Jellert, Shekhar, Karthik, Yi, B. Alexander, Kralj, Joel M., Bloxham, William, Cohen, Adam E., Werley, Christopher A., Chien, Miao-Ping, Butty, Vincent L G, Boyer, Laurie Ann, Regev, Aviv
Published 2017

An Adaptable Platform for Directed Evolution in Human Cells

by Berman, Chet Michael, Papa, Louis John, Hendel, Samuel J., Moore, Christopher Lawrence, Suen, Patreece H., Weickhardt, Alexander F., Doan, Ngoc Duc, Kumar, Caiden M., Butty, Vincent L. G., Shoulders, Matthew D.
Published 2020

Gut-Liver Physiomimetics Reveal Paradoxical Modulation of IBD-Related Inflammation by Short-Chain Fatty Acids

by Trapecar, Martin, Communal, Catherine, Velazquez, Jason G, Maass, Christian Alexander, Huang, Yu-Ja, Schneider, Kirsten, Wright, Charles, Butty, Vincent L G, Eng, George M., Yilmaz, Omer, Trumper, David L, Griffith, Linda G
Published 2020

Transcriptional Analysis of Murine Macrophages Infected with Different Toxoplasma Strains Identifies Novel Regulation of Host Signaling Pathways

by Nguyen, Quynh P., Cordeiro, Cynthia, Hassan, Musa A., Yang, Ninghan, Julien, Lindsay, Darde, Marie-Laure, Ajzenberg, Daniel, Fitzgerald, Katherine, Young, Lucy H., Melo, Mariane Bandeira, McKell, Renee, Rosowski, Emily Elizabeth, Saeij, Jeroen, Butty, Vincent L G
Published 2014

Genomic mapping of phosphorothioates reveals partial modification of short consensus sequences

by Cao, Bo, Chen, Chao, DeMott, Michael S., Cheng, Qiuxiang, Clark, Tyson A., Xiong, Xiaolin, Zheng, Xiaoqing, Levine, Stuart S., Yuan, George, Boitano, Matthew, Luong, Khai, Song, Yi, Zhou, Xiufen, Deng, Zixin, Turner, Stephen W., Korlach, Jonas, You, Delin, Wang, Lianrong, Chen, Shi, Butty, Vincent L G, Dedon, Peter C
Published 2015

Cross-site comparison of ribosomal depletion kits for Illumina RNAseq library construction

by Herbert, Zachary T, Kershner, Jamie P, Thimmapuram, Jyothi, Choudhari, Sulbha, Alekseyev, Yuriy O, Fan, Jun, Podnar, Jessica W, Wilcox, Edward, Gipson, Jenny, Gillaspy, Allison, Jepsen, Kristen, BonDurant, Sandra S, Morris, Krystalynne, Berkeley, Maura, LeClerc, Ashley, Simpson, Stephen D, Sommerville, Gary, Grimmett, Leslie, Adams, Marie, Butty, Vincent L G, Levine, Stuart S.
Published 2018

Braveheart, a Long Noncoding RNA Required for Cardiovascular Lineage Commitment

by Klattenhoff, Carla A, Scheuermann, Johanna C, Surface, Lauren E, Bradley, Robert K, Fields, Paul A, Steinhauser, Matthew L, Ding, Huiming, Torrey, Lillian, Haas, Simon, Abo, Ryan, Tabebordbar, Mohammadsharif, Lee, Richard T, Burge, Christopher B, Klattenhoff, Carla A., Scheuermann, Johanna C., Bradley, Robert K., Fields, Paul A., Butty, Vincent L G, Boyer, Laurie Ann, Surface, Lauren Elizabeth, Burge, Christopher B
Published 2016