Conservation of biodiversity in the genomics era

by Megan A. Supple, Beth Shapiro
Published 2018-09-01

AD-LIBS: inferring ancestry across hybrid genomes using low-coverage sequence data

by Nathan K. Schaefer, Beth Shapiro, Richard E. Green
Published 2017-04-01

Depletion of Hemoglobin Transcripts and Long-Read Sequencing Improves the Transcriptome Annotation of the Polar Bear (Ursus maritimus)

by Ashley Byrne, Ashley Byrne, Megan A. Supple, Roger Volden, Roger Volden, Kristin L. Laidre, Beth Shapiro, Beth Shapiro, Christopher Vollmers, Christopher Vollmers
Published 2019-07-01

The effect of inappropriate calibration: three case studies in molecular ecology.

by Simon Y W Ho, Urmas Saarma, Ross Barnett, James Haile, Beth Shapiro
Published 2008-01-01

Ten strategies for a successful transition to remote learning: Lessons learned with a flipped course

by Ana E. Garcia‐Vedrenne, Chloé Orland, Kimberly M. Ballare, Beth Shapiro, Robert K. Wayne
Published 2020-11-01

Ancient DNA provides new insights into the evolutionary history of New Zealand's extinct giant eagle.

by Michael Bunce, Marta Szulkin, Heather R L Lerner, Ian Barnes, Beth Shapiro, Alan Cooper, Richard N Holdaway
Published 2005-01-01

Experimental Investigation of the Dietary Ecology of the Extinct Passenger Pigeon, Ectopistes migratorius

by Ben J. Novak, Ben J. Novak, James A. Estes, Holland E. Shaw, Erika V. Novak, Beth Shapiro
Published 2018-03-01

Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics.

by Philippe Lemey, Sergei L Kosakovsky Pond, Alexei J Drummond, Oliver G Pybus, Beth Shapiro, Helena Barroso, Nuno Taveira, Andrew Rambaut
Published 2007-02-01

The global spread of hepatitis C virus 1a and 1b: a phylodynamic and phylogeographic analysis.

by Gkikas Magiorkinis, Emmanouil Magiorkinis, Dimitrios Paraskevis, Simon Y W Ho, Beth Shapiro, Oliver G Pybus, Jean-Pierre Allain, Angelos Hatzakis
Published 2009-12-01

The origin of the 'Mycoplasma mycoides cluster' coincides with domestication of ruminants.

by Anne Fischer, Beth Shapiro, Cecilia Muriuki, Martin Heller, Christiane Schnee, Erik Bongcam-Rudloff, Edy M Vilei, Joachim Frey, Joerg Jores
Published 2012-01-01

A ligation-based single-stranded library preparation method to analyze cell-free DNA and synthetic oligos

by Christopher J. Troll, Joshua Kapp, Varsha Rao, Kelly M. Harkins, Charles Cole, Colin Naughton, Jessica M. Morgan, Beth Shapiro, Richard E. Green
Published 2019-12-01

Ancient DNA Resolves the History of Tetragnatha (Araneae, Tetragnathidae) Spiders on Rapa Nui

by Darko D. Cotoras, Gemma G. R. Murray, Joshua Kapp, Rosemary G. Gillespie, Charles Griswold, W. Brian Simison, Richard E. Green, Beth Shapiro
Published 2017-12-01

Genomic evidence for island population conversion resolves conflicting theories of polar bear evolution.

by James A Cahill, Richard E Green, Tara L Fulton, Mathias Stiller, Flora Jay, Nikita Ovsyanikov, Rauf Salamzade, John St John, Ian Stirling, Montgomery Slatkin, Beth Shapiro
Published 2013-01-01

Genomic Analysis of Hepatitis B Virus Reveals Antigen State and Genotype as Sources of Evolutionary Rate Variation

by Andrew Rambaut, Beth Shapiro, Burentau Teriboriki, Tebuka Toatu, David Penny, Andrew Masta, Joji Malani, Mathias Supuri, Jan Pryor, Abby Harrison, Philippe Lemey, Chris Moyes, Susanne Horn, Matthew Hurles
Published 2011-01-01

Mitogenomics of the Extinct Cave Lion, Panthera spelaea (Goldfuss, 1810), Resolve its Position within the Panthera Cats

by Ross Barnett, Marie Lisandra Zepeda Mendoza, André Elias Rodrigues Soares, Simon Y W Ho, Grant Zazula, Nobuyuki Yamaguchi, Beth Shapiro, Irina V Kirillova, Greger Larson, M Thomas P Gilbert
Published 2016-06-01

A new genus of horse from Pleistocene North America

by Peter D Heintzman, Grant D Zazula, Ross DE MacPhee, Eric Scott, James A Cahill, Brianna K McHorse, Joshua D Kapp, Mathias Stiller, Matthew J Wooller, Ludovic Orlando, John Southon, Duane G Froese, Beth Shapiro
Published 2017-11-01

A complete mitochondrial genome sequence from a mesolithic wild aurochs (Bos primigenius).

by Ceiridwen J Edwards, David A Magee, Stephen D E Park, Paul A McGettigan, Amanda J Lohan, Alison Murphy, Emma K Finlay, Beth Shapiro, Andrew T Chamberlain, Martin B Richards, Daniel G Bradley, Brendan J Loftus, David E MacHugh
Published 2010-02-01

Mitochondrial phylogenomics of modern and ancient equids.

by Julia T Vilstrup, Andaine Seguin-Orlando, Mathias Stiller, Aurelien Ginolhac, Maanasa Raghavan, Sandra C A Nielsen, Jacobo Weinstock, Duane Froese, Sergei K Vasiliev, Nikolai D Ovodov, Joel Clary, Kristofer M Helgen, Robert C Fleischer, Alan Cooper, Beth Shapiro, Ludovic Orlando
Published 2013-01-01

Rapid range shifts and megafaunal extinctions associated with late Pleistocene climate change

by Frederik V. Seersholm, Daniel J. Werndly, Alicia Grealy, Taryn Johnson, Erin M. Keenan Early, Ernest L. Lundelius, Barbara Winsborough, Grayal Earle Farr, Rickard Toomey, Anders J. Hansen, Beth Shapiro, Michael R. Waters, Gregory McDonald, Anna Linderholm, Thomas W. Stafford, Michael Bunce
Published 2020-06-01

Palaeogenomes of Eurasian straight-tusked elephants challenge the current view of elephant evolution

by Matthias Meyer, Eleftheria Palkopoulou, Sina Baleka, Mathias Stiller, Kirsty E H Penkman, Kurt W Alt, Yasuko Ishida, Dietrich Mania, Swapan Mallick, Tom Meijer, Harald Meller, Sarah Nagel, Birgit Nickel, Sven Ostritz, Nadin Rohland, Karol Schauer, Tim Schüler, Alfred L Roca, David Reich, Beth Shapiro, Michael Hofreiter
Published 2017-06-01