Anomaly detection in genomic catalogues using unsupervised multi-view autoencoders

by Quentin Ferré, Jeanne Chèneby, Denis Puthier, Cécile Capponi, Benoît Ballester
Published 2021-09-01

TAF4, a subunit of transcription factor II D, directs promoter occupancy of nuclear receptor HNF4A during post-natal hepatocyte differentiation

by Daniil Alpern, Diana Langer, Benoit Ballester, Stephanie Le Gras, Christophe Romier, Gabrielle Mengus, Irwin Davidson
Published 2014-09-01

Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study

by Giovanna Ambrosini, Ilya Vorontsov, Dmitry Penzar, Romain Groux, Oriol Fornes, Daria D. Nikolaeva, Benoit Ballester, Jan Grau, Ivo Grosse, Vsevolod Makeev, Ivan Kulakovskiy, Philipp Bucher
Published 2020-05-01

Involvement of G-quadruplex regions in mammalian replication origin activity

by Paulina Prorok, Marie Artufel, Antoine Aze, Philippe Coulombe, Isabelle Peiffer, Laurent Lacroix, Aurore Guédin, Jean-Louis Mergny, Julia Damaschke, Aloys Schepers, Christelle Cayrou, Marie-Paule Teulade-Fichou, Benoit Ballester, Marcel Méchali
Published 2019-07-01

Author Correction: Involvement of G-quadruplex regions in mammalian replication origin activity

by Paulina Prorok, Marie Artufel, Antoine Aze, Philippe Coulombe, Isabelle Peiffer, Laurent Lacroix, Aurore Guédin, Jean-Louis Mergny, Julia Damaschke, Aloys Schepers, Christelle Cayrou, Marie-Paule Teulade-Fichou, Benoit Ballester, Marcel Méchali
Published 2020-06-01

A predictable conserved DNA base composition signature defines human core DNA replication origins

by Ildem Akerman, Bahar Kasaai, Alina Bazarova, Pau Biak Sang, Isabelle Peiffer, Marie Artufel, Romain Derelle, Gabrielle Smith, Marta Rodriguez-Martinez, Manuela Romano, Sandrina Kinet, Peter Tino, Charles Theillet, Naomi Taylor, Benoit Ballester, Marcel Méchali
Published 2020-09-01

Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways

by Benoit Ballester, Alejandra Medina-Rivera, Dominic Schmidt, Mar Gonzàlez-Porta, Matthew Carlucci, Xiaoting Chen, Kyle Chessman, Andre J Faure, Alister PW Funnell, Angela Goncalves, Claudia Kutter, Margus Lukk, Suraj Menon, William M McLaren, Klara Stefflova, Stephen Watt, Matthew T Weirauch, Merlin Crossley, John C Marioni, Duncan T Odom, Paul Flicek, Michael D Wilson
Published 2014-10-01