CpG island composition differences are a source of gene expression noise indicative of promoter responsiveness

by Michael D. Morgan, John C. Marioni
Published 2018-06-01

BASiCS: Bayesian Analysis of Single-Cell Sequencing Data.

by Catalina A Vallejos, John C Marioni, Sylvia Richardson
Published 2015-06-01

Mosaic autosomal aneuploidies are detectable from single-cell RNAseq data

by Jonathan A. Griffiths, Antonio Scialdone, John C. Marioni
Published 2017-11-01

A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor [version 2; referees: 1 approved, 4 approved with reservations]

by Aaron T.L. Lun, Davis J. McCarthy, John C. Marioni
Published 2016-10-01

Stimulation strength controls the rate of initiation but not the molecular organisation of TCR-induced signalling

by Claire Y Ma, John C Marioni, Gillian M Griffiths, Arianne C Richard
Published 2020-05-01

Functional comparison of innate immune signaling pathways in primates.

by Luis B Barreiro, John C Marioni, Ran Blekhman, Matthew Stephens, Yoav Gilad
Published 2010-12-01

Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis

by Christina Ernst, Nils Eling, Celia P. Martinez-Jimenez, John C. Marioni, Duncan T. Odom
Published 2019-03-01

f-scLVM: scalable and versatile factor analysis for single-cell RNA-seq

by Florian Buettner, Naruemon Pratanwanich, Davis J. McCarthy, John C. Marioni, Oliver Stegle
Published 2017-11-01

A genome-wide study of DNA methylation patterns and gene expression levels in multiple human and chimpanzee tissues.

by Athma A Pai, Jordana T Bell, John C Marioni, Jonathan K Pritchard, Yoav Gilad
Published 2011-02-01

Correction: Corrigendum: Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression

by Jong Kyoung Kim, Aleksandra A. Kolodziejczyk, Tomislav Ilicic, Sarah A. Teichmann, John C. Marioni
Published 2016-01-01

Detection and removal of barcode swapping in single-cell RNA-seq data

by Jonathan A. Griffiths, Arianne C. Richard, Karsten Bach, Aaron T. L. Lun, John C. Marioni
Published 2018-07-01

Quantitative genetic analysis deciphers the impact of cis and trans regulation on cell-to-cell variability in protein expression levels.

by Michael D Morgan, Etienne Patin, Bernd Jagla, Milena Hasan, Lluís Quintana-Murci, John C Marioni
Published 2020-03-01

MOFA+: a statistical framework for comprehensive integration of multi-modal single-cell data

by Ricard Argelaguet, Damien Arnol, Danila Bredikhin, Yonatan Deloro, Britta Velten, John C. Marioni, Oliver Stegle
Published 2020-05-01

Differentiation dynamics of mammary epithelial cells revealed by single-cell RNA sequencing

by Karsten Bach, Sara Pensa, Marta Grzelak, James Hadfield, David J. Adams, John C. Marioni, Walid T. Khaled
Published 2017-12-01

Maturing Human CD127+ CCR7+ PDL1+ Dendritic Cells Express AIRE in the Absence of Tissue Restricted Antigens

by Joannah R. Fergusson, Michael D. Morgan, Melanie Bruchard, Leonie Huitema, Leonie Huitema, Balthasar A. Heesters, Vincent van Unen, Jan Piet van Hamburg, Jan Piet van Hamburg, Nicole N. van der Wel, Daisy Picavet, Frits Koning, Sander W. Tas, Sander W. Tas, Mark S. Anderson, John C. Marioni, John C. Marioni, John C. Marioni, Georg A. Holländer, Hergen Spits
Published 2019-01-01

CTCF maintains regulatory homeostasis of cancer pathways

by Sarah J. Aitken, Ximena Ibarra-Soria, Elissavet Kentepozidou, Paul Flicek, Christine Feig, John C. Marioni, Duncan T. Odom
Published 2018-08-01

Coordinated changes in gene expression kinetics underlie both mouse and human erythroid maturation

by Melania Barile, Ivan Imaz-Rosshandler, Isabella Inzani, Shila Ghazanfar, Jennifer Nichols, John C. Marioni, Carolina Guibentif, Berthold Göttgens
Published 2021-07-01

Support for a clade of Placozoa and Cnidaria in genes with minimal compositional bias

by Christopher E Laumer, Harald Gruber-Vodicka, Michael G Hadfield, Vicki B Pearse, Ana Riesgo, John C Marioni, Gonzalo Giribet
Published 2018-10-01

Codon-Driven Translational Efficiency Is Stable across Diverse Mammalian Cell States.

by Konrad L M Rudolph, Bianca M Schmitt, Diego Villar, Robert J White, John C Marioni, Claudia Kutter, Duncan T Odom
Published 2016-05-01

Regulatory Divergence of Transcript Isoforms in a Mammalian Model System.

by Sarah Leigh-Brown, Angela Goncalves, David Thybert, Klara Stefflova, Stephen Watt, Paul Flicek, Alvis Brazma, John C Marioni, Duncan T Odom
Published 2015-01-01