A Framework for Effective Application of Machine Learning to Microbiome-Based Classification Problems

by Begüm D. Topçuoğlu, Nicholas A. Lesniak, Mack T. Ruffin, Jenna Wiens, Patrick D. Schloss
Published 2020-06-01

Fecal Short-Chain Fatty Acids Are Not Predictive of Colonic Tumor Status and Cannot Be Predicted Based on Bacterial Community Structure

by Marc A. Sze, Begüm D. Topçuoğlu, Nicholas A. Lesniak, Mack T. Ruffin, Patrick D. Schloss
Published 2019-07-01

Hydrogen limitation and syntrophic growth among natural assemblages of thermophilic methanogens at deep-sea hydrothermal vents

by Begüm D. Topçuoğlu, Lucy C. Stewart, Hilary G Morrison, David A. Butterfield, David A. Butterfield, Julie A Huber, James F. Holden
Published 2016-08-01

Long-term forest soil warming alters microbial communities in temperate forest soils

by Kristen M DeAngelis, Grace ePold, Begum D Topcuoglu, Linda T. A. van Diepen, Rebecca M Varney, Jeffrey eBlanchard, Jerry eMelillo, Serita eFrey
Published 2015-02-01

Ten simple rules to increase computational skills among biologists with Code Clubs.

by Ada K Hagan, Nicholas A Lesniak, Marcy J Balunas, Lucas Bishop, William L Close, Matthew D Doherty, Amanda G Elmore, Kaitlin J Flynn, Geoffrey D Hannigan, Charlie C Koumpouras, Matthew L Jenior, Ariangela J Kozik, Kathryn McBride, Samara B Rifkin, Joshua M A Stough, Kelly L Sovacool, Marc A Sze, Sarah Tomkovich, Begum D Topcuoglu, Patrick D Schloss
Published 2020-08-01

Alterations of the human gut microbiome in multiple sclerosis

by Sushrut Jangi, Roopali Gandhi, Laura M. Cox, Ning Li, Felipe von Glehn, Raymond Yan, Bonny Patel, Maria Antonietta Mazzola, Shirong Liu, Bonnie L. Glanz, Sandra Cook, Stephanie Tankou, Fiona Stuart, Kirsy Melo, Parham Nejad, Kathleen Smith, Begüm D. Topçuolu, James Holden, Pia Kivisäkk, Tanuja Chitnis, Philip L. De Jager, Francisco J. Quintana, Georg K. Gerber, Lynn Bry, Howard L. Weiner
Published 2016-06-01