DNA-RNA Hybrid (R-Loop): From a Unified Picture of the Mammalian Telomere to the Genome-Wide Profile

by Minoo Rassoulzadegan, Ali Sharifi-Zarchi, Leila Kianmehr
Published 2021-06-01

Comparative In Vitro Evaluation of Human Dental Pulp and Follicle Stem Cell Commitment

by Razieh Karamzadeh, Mohamadreza Baghaban Eslaminejad, Ali Sharifi-Zarchi
Published 2016-10-01

The assessment of efficient representation of drug features using deep learning for drug repositioning

by Mahroo Moridi, Marzieh Ghadirinia, Ali Sharifi-Zarchi, Fatemeh Zare-Mirakabad
Published 2019-11-01

The metabolic network model of primed/naive human embryonic stem cells underlines the importance of oxidation-reduction potential and tryptophan metabolism in primed pluripotency

by Meisam Yousefi, Sayed-Amir Marashi, Ali Sharifi-Zarchi, Sara Taleahmad
Published 2019-08-01

StrongestPath: a Cytoscape application for protein–protein interaction analysis

by Zaynab Mousavian, Mehran Khodabandeh, Ali Sharifi-Zarchi, Alireza Nadafian, Alireza Mahmoudi
Published 2021-06-01

An integrative Bayesian network approach to highlight key drivers in systemic lupus erythematosus

by Samaneh Maleknia, Zahra Salehi, Vahid Rezaei Tabar, Ali Sharifi-Zarchi, Kaveh Kavousi
Published 2020-06-01

Down-Regulation of miR-200c and Up-Regulation of miR-30c Target both Stemness and Metastasis Genes in Breast Cancer

by Mahsa Rahimi, Ali Sharifi-Zarchi, Nosratollah Zarghami, Lobat Geranpayeh, Marzieh Ebrahimi, Effat Alizadeh
Published 2019-08-01

Genome-Wide Distribution of Nascent Transcripts in Sperm DNA, Products of a Late Wave of General Transcription

by Leila Kianmehr, Homayoun Khazali, Hassan Rajabi-Maham, Ali Sharifi-Zarchi, François Cuzin, Minoo Rassoulzadegan
Published 2019-10-01

miR-361-5p as a promising qRT-PCR internal control for tumor and normal breast tissues.

by Sogol Ghanbari, Adel Salimi, Saeid Rahmani, Nahid Nafissi, Ali Sharifi-Zarchi, Seyed Javad Mowla
Published 2021-01-01

Natural biased coin encoded in the genome determines cell strategy.

by Faezeh Dorri, Hamid Mahini, Ali Sharifi-Zarchi, Mehdi Totonchi, Ruzbeh Tusserkani, Hamid Pezeshk, Mehdi Sadeghi
Published 2014-01-01

Downregulation Of Extracellular Matrix And Cell Adhesion Molecules In Cumulus Cells Of Infertile Polycystic Ovary Syndrome Women With And Without Insulin Resistance

by Fatemeh Hassani, Shahrbanoo Oryan, Poopak Eftekhari-Yazdi, Masood Bazrgar, Ashraf Moini, Nahid Nasiri, Ali Sharifi-Zarchi
Published 2018-12-01

Dysregulation of ribosome-related genes in ankylosing spondylitis: a systems biology approach and experimental method

by Arezou Lari, Hamid Gholami Pourbadie, Ali Sharifi-Zarchi, Maryam Akhtari, Leila Nejatbakhsh Samimi, Ahmadreza Jamshidi, Mahdi Mahmoudi
Published 2021-09-01

Analysis of gene expression profiles and protein-protein interaction networks in multiple tissues of systemic sclerosis

by Elham Karimizadeh, Ali Sharifi-Zarchi, Hassan Nikaein, Seyedehsaba Salehi, Bahar Salamatian, Naser Elmi, Farhad Gharibdoost, Mahdi Mahmoudi
Published 2019-12-01

Machine Learning and Network Analysis of Molecular Dynamics Trajectories Reveal Two Chains of Red/Ox-specific Residue Interactions in Human Protein Disulfide Isomerase

by Razieh Karamzadeh, Mohammad Hossein Karimi-Jafari, Ali Sharifi-Zarchi, Hamidreza Chitsaz, Ghasem Hosseini Salekdeh, Ali Akbar Moosavi-Movahedi
Published 2017-06-01

Expression and Function of <i>C1orf132</i> Long-Noncoding RNA in Breast Cancer Cell Lines and Tissues

by Afsaneh Malekzadeh Shafaroudi, Ali Sharifi-Zarchi, Saeid Rahmani, Nahid Nafissi, Seyed Javad Mowla, Andrea Lauria, Salvatore Oliviero, Maryam M. Matin
Published 2021-06-01

Small RNA Sequencing Reveals Dlk1-Dio3 Locus-Embedded MicroRNAs as Major Drivers of Ground-State Pluripotency

by Sharif Moradi, Ali Sharifi-Zarchi, Amirhossein Ahmadi, Sepideh Mollamohammadi, Alexander Stubenvoll, Stefan Günther, Ghasem Hosseini Salekdeh, Sassan Asgari, Thomas Braun, Hossein Baharvand
Published 2017-12-01

Draft genome of Dugesia japonica provides insights into conserved regulatory elements of the brain restriction gene nou-darake in planarians

by Yang An, Akane Kawaguchi, Chen Zhao, Atsushi Toyoda, Ali Sharifi-Zarchi, Seyed Ahmad Mousavi, Reza Bagherzadeh, Takeshi Inoue, Hajime Ogino, Asao Fujiyama, Hamidreza Chitsaz, Hossein Baharvand, Kiyokazu Agata
Published 2018-08-01

DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanism

by Ali Sharifi-Zarchi, Daniela Gerovska, Kenjiro Adachi, Mehdi Totonchi, Hamid Pezeshk, Ryan J. Taft, Hans R. Schöler, Hamidreza Chitsaz, Mehdi Sadeghi, Hossein Baharvand, Marcos J. Araúzo-Bravo
Published 2017-12-01

Blockage of the Epithelial-to-Mesenchymal Transition Is Required for Embryonic Stem Cell Derivation

by Mehdi Totonchi, Seyedeh-Nafiseh Hassani, Ali Sharifi-Zarchi, Natalia Tapia, Kenjiro Adachi, Julia Arand, Boris Greber, Davood Sabour, Marcos J. Araúzo-Bravo, Jörn Walter, Mohammad Pakzad, Hamid Gourabi, Hans R. Schöler, Hossein Baharvand
Published 2017-10-01