Optimized permutation testing for information theoretic measures of multi-gene interactions

by James M. Kunert-Graf, Nikita A. Sakhanenko, David J. Galas
Published 2021-04-01

Children’s erythrocyte fatty acids are associated with the risk of islet autoimmunity

by Sari Niinistö, Iris Erlund, Hye-Seung Lee, Ulla Uusitalo, Irma Salminen, Carin Andrén Aronsson, Hemang M. Parikh, Xiang Liu, Sandra Hummel, Jorma Toppari, Jin-Xiong She, Åke Lernmark, Annette G. Ziegler, Marian Rewers, Beena Akolkar, Jeffrey P. Krischer, David Galas, Siba Das, Nikita Sakhanenko, Stephen S. Rich, William Hagopian, Jill M. Norris, Suvi M. Virtanen, the TEDDY Study Group
Published 2021-02-01

Retrocopying expands the functional repertoire of APOBEC3 antiviral proteins in primates

by Lei Yang, Michael Emerman, Harmit S Malik, Richard N McLaughlin Jnr
Published 2020-06-01

Data-driven multiscale modeling reveals the role of metabolic coupling for the spatio-temporal growth dynamics of yeast colonies

by Jukka Intosalmi, Adrian C. Scott, Michelle Hays, Nicholas Flann, Olli Yli-Harja, Harri Lähdesmäki, Aimée M. Dudley, Alexander Skupin
Published 2019-12-01

A single clonal lineage of transmissible cancer identified in two marine mussel species in South America and Europe

by Marisa A Yonemitsu, Rachael M Giersch, Maria Polo-Prieto, Maurine Hammel, Alexis Simon, Florencia Cremonte, Fernando T Avilés, Nicolás Merino-Véliz, Erika AV Burioli, Annette F Muttray, James Sherry, Carol Reinisch, Susan A Baldwin, Stephen P Goff, Maryline Houssin, Gloria Arriagada, Nuria Vázquez, Nicolas Bierne, Michael J Metzger
Published 2019-11-01

Small RNA profiling of low biomass samples: identification and removal of contaminants

by Anna Heintz-Buschart, Dilmurat Yusuf, Anne Kaysen, Alton Etheridge, Joëlle V. Fritz, Patrick May, Carine de Beaufort, Bimal B. Upadhyaya, Anubrata Ghosal, David J. Galas, Paul Wilmes
Published 2018-05-01

Extracting Reproducible Time-Resolved Resting State Networks Using Dynamic Mode Decomposition

by James M. Kunert-Graf, Kristian M. Eschenburg, David J. Galas, J. Nathan Kutz, Swati D. Rane, Bingni W. Brunton
Published 2019-10-01

Exploiting the Autozygome to Support Previously Published Mendelian Gene-Disease Associations: An Update

by Sateesh Maddirevula, Hanan E. Shamseldin, Amy Sirr, Lama AlAbdi, Lama AlAbdi, Russell S. Lo, Nour Ewida, Mashael Al-Qahtani, Mais Hashem, Firdous Abdulwahab, Omar Aboyousef, Namik Kaya, Dorota Monies, May H. Salem, Naffaa Al Harbi, Hesham M. Aldhalaan, Hamad Alzaidan, Hamad Alzaidan, Hadeel M. Almanea, Abrar K. Alsalamah, Fuad Al Mutairi, Samira Ismail, Ghada M. H. Abdel-Salam, Amal Alhashem, Amal Alhashem, Ali Asery, Eissa Faqeih, Amal AlQassmi, Waleed Al-Hamoudi, Talal Algoufi, Mohammad Shagrani, Mohammad Shagrani, Aimée M. Dudley, Fowzan S. Alkuraya, Fowzan S. Alkuraya
Published 2020-12-01

The RNA Complement of Outer Membrane Vesicles From Salmonella enterica Serovar Typhimurium Under Distinct Culture Conditions

by Antoine Malabirade, Janine Habier, Anna Heintz-Buschart, Patrick May, Julien Godet, Rashi Halder, Alton Etheridge, David Galas, Paul Wilmes, Joëlle V. Fritz
Published 2018-08-01

Symmetries among Multivariate Information Measures Explored Using Möbius Operators

by David J. Galas, Nikita A. Sakhanenko
Published 2019-01-01

Partial Information Decomposition and the Information Delta: A Geometric Unification Disentangling Non-Pairwise Information

by James Kunert-Graf, Nikita Sakhanenko, David Galas
Published 2020-11-01

Modeling of Brain-Like Concept Coding with Adulthood Neurogenesis in the Dentate Gyrus

by Ye Wang, Yan Gao, Yaling Deng, Lei Yang
Published 2019-01-01

Expansion of the Kullback-Leibler Divergence, and a New Class of Information Metrics

by David J. Galas, Gregory Dewey, James Kunert-Graf, Nikita A. Sakhanenko
Published 2017-04-01

Cerebrospinal Fluid MicroRNA Changes in Cognitively Normal Veterans With a History of Deployment-Associated Mild Traumatic Brain Injury

by Theresa A. Lusardi, Ursula S. Sandau, Nikita A. Sakhanenko, Sarah Catherine B. Baker, Jack T. Wiedrick, Jodi A. Lapidus, Murray A. Raskind, Murray A. Raskind, Ge Li, Ge Li, Ge Li, Elaine R. Peskind, Elaine R. Peskind, David J. Galas, Joseph F. Quinn, Joseph F. Quinn, Joseph F. Quinn, Julie A. Saugstad
Published 2021-09-01

Peripheral autoreactive CD8 T‐cell frequencies are too variable to be a reliable predictor of disease progression of human type 1 diabetes

by Johnna D Wesley, Susanne Pfeiffer, Darius Schneider, David Friedrich, Nikole Perdue, Birgit Sehested‐Hansen, William Hagopian, Matthias G vonHerrath
Published 2021-01-01

Extracellular Vesicle Encapsulated MicroRNAs in Patients with Type 2 Diabetes Are Affected by Metformin Treatment

by Vikas Ghai, Taek-Kyun Kim, Alton Etheridge, Trine Nielsen, Torben Hansen, Oluf Pedersen, David Galas, Kai Wang
Published 2019-05-01

Chromoanagenesis Event Underlies a de novo Pericentric and Multiple Paracentric Inversions in a Single Chromosome Causing Coffin–Siris Syndrome

by Christopher M. Grochowski, Ana C. V. Krepischi, Jesper Eisfeldt, Jesper Eisfeldt, Haowei Du, Debora R. Bertola, Debora R. Bertola, Danyllo Oliveira, Silvia S. Costa, James R. Lupski, James R. Lupski, James R. Lupski, James R. Lupski, Anna Lindstrand, Anna Lindstrand, Claudia M. B. Carvalho, Claudia M. B. Carvalho
Published 2021-08-01

Pituitary Tumor Transforming Gene 1 Orchestrates Gene Regulatory Variation in Mouse Ventral Midbrain During Aging

by Yujuan Gui, Mélanie H. Thomas, Pierre Garcia, Pierre Garcia, Pierre Garcia, Mona Karout, Rashi Halder, Alessandro Michelucci, Alessandro Michelucci, Heike Kollmus, Cuiqi Zhou, Shlomo Melmed, Klaus Schughart, Klaus Schughart, Klaus Schughart, Rudi Balling, Michel Mittelbronn, Michel Mittelbronn, Michel Mittelbronn, Michel Mittelbronn, Joseph H. Nadeau, Joseph H. Nadeau, Robert W. Williams, Thomas Sauter, Manuel Buttini, Lasse Sinkkonen
Published 2020-09-01

25(OH)D Levels in Infancy Is Associated With Celiac Disease Autoimmunity in At-Risk Children: A Case–Control Study

by Carin Andrén Aronsson, Xiang Liu, Jill M. Norris, Ulla Uusitalo, Martha D. Butterworth, Sibylle Koletzko, Sibylle Koletzko, Suvi M. Virtanen, Suvi M. Virtanen, Suvi M. Virtanen, Iris Erlund, Kalle Kurppa, Kalle Kurppa, Kalle Kurppa, Kalle Kurppa, William A. Hagopian, Marian J. Rewers, Jin-Xiong She, Jorma Toppari, Jorma Toppari, Anette-G. Ziegler, Beena Akolkar, Jeffrey P. Krischer, Daniel Agardh
Published 2021-08-01