Fast reconstruction of compact context-specific metabolic network models.

by Nikos Vlassis, Maria Pires Pacheco, Thomas Sauter
Published 2014-01-01

Using Regularization to Infer Cell Line Specificity in Logical Network Models of Signaling Pathways

by Sébastien De Landtsheer, Philippe Lucarelli, Thomas Sauter
Published 2018-05-01

Computational models of melanoma

by Marco Albrecht, Philippe Lucarelli, Dagmar Kulms, Thomas Sauter
Published 2020-05-01

Identification of new IκBα complexes by an iterative experimental and mathematical modeling approach.

by Fabian Konrath, Johannes Witt, Thomas Sauter, Dagmar Kulms
Published 2014-03-01

Switch of sensitivity dynamics revealed with DyGloSA toolbox for dynamical global sensitivity analysis as an early warning for system's critical transition.

by Tatiana Baumuratova, Simona Dobre, Thierry Bastogne, Thomas Sauter
Published 2013-01-01

IDARE2—Simultaneous Visualisation of Multiomics Data in Cytoscape

by Thomas Pfau, Mafalda Galhardo, Jake Lin, Thomas Sauter
Published 2021-05-01

A dynamic multi-tissue model to study human metabolism

by Patricia Martins Conde, Thomas Pfau, Maria Pires Pacheco, Thomas Sauter
Published 2021-01-01

optPBN: an optimisation toolbox for probabilistic Boolean networks.

by Panuwat Trairatphisan, Andrzej Mizera, Jun Pang, Alexandru Adrian Tantar, Thomas Sauter
Published 2014-01-01

Importance of the biomass formulation for cancer metabolic modeling and drug prediction

by María Moscardó García, Maria Pacheco, Tamara Bintener, Luana Presta, Thomas Sauter
Published 2021-10-01

Analysing the role of UVB-induced translational inhibition and PP2Ac deactivation in NF-κB signalling using a minimal mathematical model.

by Johannes Witt, Fabian Konrath, Oliver Sawodny, Michael Ederer, Dagmar Kulms, Thomas Sauter
Published 2012-01-01

Transcriptomics profiling of human SGBS adipogenesis

by Mafalda Galhardo, Lasse Sinkkonen, Philipp Berninger, Jake Lin, Thomas Sauter, Merja Heinäniemi
Published 2014-12-01

ChIP-seq profiling of the active chromatin marker H3K4me3 and PPARγ, CEBPα and LXR target genes in human SGBS adipocytes

by Mafalda Galhardo, Lasse Sinkkonen, Philipp Berninger, Jake Lin, Thomas Sauter, Merja Heinäniemi
Published 2014-12-01

A Study of the PDGF Signaling Pathway with PRISM

by Qixia Yuan, Jun Pang, Sjouke Mauw, Panuwat Trairatphisan, Monique Wiesinger, Thomas Sauter
Published 2011-09-01

A Probabilistic Boolean Network Approach for the Analysis of Cancer-Specific Signalling: A Case Study of Deregulated PDGF Signalling in GIST.

by Panuwat Trairatphisan, Panuwat Trairatphisan, Monique Wiesinger, Christelle Bahlawane, Serge Haan, Thomas Sauter
Published 2016-01-01

Degree Adjusted Large-Scale Network Analysis Reveals Novel Putative Metabolic Disease Genes

by Apurva Badkas, Thanh-Phuong Nguyen, Laura Caberlotto, Jochen G. Schneider, Sébastien De Landtsheer, Thomas Sauter
Published 2021-02-01

Identifying and targeting cancer-specific metabolism with network-based drug target predictionResearch in context section

by Maria Pires Pacheco, Tamara Bintener, Dominik Ternes, Dagmar Kulms, Serge Haan, Elisabeth Letellier, Thomas Sauter
Published 2019-05-01

Role of Calprotectin as a Modulator of the IL27-Mediated Proinflammatory Effect on Endothelial Cells

by Susann A. Dorosz, Aurélien Ginolhac, Thilo Kähne, Michael Naumann, Thomas Sauter, Alexandre Salsmann, Jean-Luc Bueb
Published 2015-01-01

L-plastin Ser5 phosphorylation is modulated by the PI3K/SGK pathway and promotes breast cancer cell invasiveness

by Raquel A. C. Machado, Dunja Stojevski, Sébastien De Landtsheer, Philippe Lucarelli, Alexandre Baron, Thomas Sauter, Elisabeth Schaffner-Reckinger
Published 2021-02-01

ON/OFF and beyond--a boolean model of apoptosis.

by Rebekka Schlatter, Kathrin Schmich, Ima Avalos Vizcarra, Peter Scheurich, Thomas Sauter, Christoph Borner, Michael Ederer, Irmgard Merfort, Oliver Sawodny
Published 2009-12-01

Single-nuclei chromatin profiling of ventral midbrain reveals cell identity transcription factors and cell-type-specific gene regulatory variation

by Yujuan Gui, Kamil Grzyb, Mélanie H. Thomas, Jochen Ohnmacht, Pierre Garcia, Manuel Buttini, Alexander Skupin, Thomas Sauter, Lasse Sinkkonen
Published 2021-09-01