Type 1 diabetes in pregnancy is associated with distinct changes in the composition and function of the gut microbiome

by Alexandra J. Roth-Schulze, Megan A. S. Penno, Katrina M. Ngui, Helena Oakey, Esther Bandala-Sanchez, Alannah D. Smith, Theo R. Allnutt, Rebecca L. Thomson, Peter J. Vuillermin, Maria E. Craig, William D. Rawlinson, Elizabeth A. Davis, Mark Harris, Georgia Soldatos, Peter G. Colman, John M. Wentworth, Aveni Haynes, Simon C. Barry, Richard O. Sinnott, Grant Morahan, Naiara G. Bediaga, Gordon K. Smyth, Anthony T. Papenfuss, Jennifer J. Couper, Leonard C. Harrison, on behalf of the ENDIA Study Group
Published 2021-08-01

Prevotella copri increases fat accumulation in pigs fed with formula diets

by Congying Chen, Shaoming Fang, Hong Wei, Maozhang He, Hao Fu, Xinwei Xiong, Yunyan Zhou, Jinyuan Wu, Jun Gao, Hui Yang, Lusheng Huang
Published 2021-08-01

The metabolic footprint of Clostridia and Erysipelotrichia reveals their role in depleting sugar alcohols in the cecum

by Connor R. Tiffany, Jee-Yon Lee, Andrew W. L. Rogers, Erin E. Olsan, Pavel Morales, Franziska Faber, Andreas J. Bäumler
Published 2021-08-01

The allometry of cellular DNA and ribosomal gene content among microbes and its use for the assessment of microbiome community structure

by Luis Gonzalez-de-Salceda, Ferran Garcia-Pichel
Published 2021-08-01

Dynamics of dark fermentation microbial communities in the light of lactate and butyrate production

by Anna Detman, Daniel Laubitz, Aleksandra Chojnacka, Pawel R. Kiela, Agnieszka Salamon, Albert Barberán, Yongjian Chen, Fei Yang, Mieczysław K. Błaszczyk, Anna Sikora
Published 2021-07-01

Correction to: A probiotic has differential effects on allergic airway inflammation in A/J and C57BL/6 mice and is correlated with the gut microbiome

by Mateus B. Casaro, Andrew M. Thomas, Eduardo Mendes, Claudio Fukumori, Willian R. Ribeiro, Fernando A. Oliveira, Amanda R. Crisma, Gilson M. Murata, Bruna Bizzarro, Anderson Sá-Nunes, Joao C. Setubal, Marcia P. A. Mayer, Flaviano S. Martins, Angélica T. Vieira, Ana T. F. B. Antiorio, Wothan Tavares-de-Lima, Niels O. S. Camara, Rui Curi, Emmanuel Dias-Neto, Caroline M. Ferreira
Published 2021-07-01

Vibrio vulnificus induces the death of a major bacterial species in the mouse gut via cyclo-Phe-Pro

by Jeong-A Kim, Bo-Ram Jang, Yu-Ra Kim, You-Chul Jung, Kun-Soo Kim, Kyu-Ho Lee
Published 2021-07-01

From gut microbiota to host appetite: gut microbiota-derived metabolites as key regulators

by Hui Han, Bao Yi, Ruqing Zhong, Mengyu Wang, Shunfen Zhang, Jie Ma, Yulong Yin, Jie Yin, Liang Chen, Hongfu Zhang
Published 2021-07-01

Glacier ice archives nearly 15,000-year-old microbes and phages

by Zhi-Ping Zhong, Funing Tian, Simon Roux, M. Consuelo Gazitúa, Natalie E. Solonenko, Yueh-Fen Li, Mary E. Davis, James L. Van Etten, Ellen Mosley-Thompson, Virginia I. Rich, Matthew B. Sullivan, Lonnie G. Thompson
Published 2021-07-01

Plant developmental stage drives the differentiation in ecological role of the maize microbiome

by Chao Xiong, Brajesh K. Singh, Ji-Zheng He, Yan-Lai Han, Pei-Pei Li, Li-Hua Wan, Guo-Zhong Meng, Si-Yi Liu, Jun-Tao Wang, Chuan-Fa Wu, An-Hui Ge, Li-Mei Zhang
Published 2021-08-01

Bog ecosystems as a playground for plant–microbe coevolution: bryophytes and vascular plants harbour functionally adapted bacteria

by Wisnu Adi Wicaksono, Tomislav Cernava, Christian Berg, Gabriele Berg
Published 2021-08-01

Metapangenomics reveals depth-dependent shifts in metabolic potential for the ubiquitous marine bacterial SAR324 lineage

by Dominique Boeuf, John M. Eppley, Daniel R. Mende, Rex R. Malmstrom, Tanja Woyke, Edward F. DeLong
Published 2021-08-01

Correction to: Microbiomes attached to fresh perennial ryegrass are temporally resilient and adapt to changing ecological niches

by Sharon A. Huws, Joan E. Edwards, Wanchang Lin, Francesco Rubino, Mark Alston, David Swarbreck, Shabhonam Caim, Pauline Rees Stevens, Justin Pachebat, Mi-Young Won, Linda B. Oyama, Christopher J. Creevey, Alison H. Kingston-Smith
Published 2021-08-01

Bacterial colonization dynamics and antibiotic resistance gene dissemination in the hospital environment after first patient occupancy: a longitudinal metagenetic study

by Tilman E. Klassert, Rasmus Leistner, Cristina Zubiria-Barrera, Magdalena Stock, Mercedes López, Robert Neubert, Dominik Driesch, Petra Gastmeier, Hortense Slevogt
Published 2021-08-01

Modeling the temporal dynamics of cervicovaginal microbiota identifies targets that may promote reproductive health

by Alexander Munoz, Matthew R. Hayward, Seth M. Bloom, Muntsa Rocafort, Sinaye Ngcapu, Nomfuneko A. Mafunda, Jiawu Xu, Nondumiso Xulu, Mary Dong, Krista L. Dong, Nasreen Ismail, Thumbi Ndung’u, Musie S. Ghebermichael, Douglas S. Kwon
Published 2021-07-01

Correction to: Depletion of acetate-producing bacteria from the gut microbiota facilitates cognitive impairment through the gut-brain neural mechanism in diabetic mice

by Hong Zheng, Pengtao Xu, Qiaoying Jiang, Qingqing Xu, Yafei Zheng, Junjie Yan, Hui Ji, Jie Ning, Xi Zhang, Chen Li, Limin Zhang, Yuping Li, Xiaokun Li, Weihong Song, Hongchang Gao
Published 2021-07-01

HumGut: a comprehensive human gut prokaryotic genomes collection filtered by metagenome data

by Pranvera Hiseni, Knut Rudi, Robert C. Wilson, Finn Terje Hegge, Lars Snipen
Published 2021-07-01

Host habitat is the major determinant of the gut microbiome of fish

by Pil Soo Kim, Na-Ri Shin, Jae-Bong Lee, Min-Soo Kim, Tae Woong Whon, Dong-Wook Hyun, Ji-Hyun Yun, Mi-Ja Jung, Joon Yong Kim, Jin-Woo Bae
Published 2021-07-01

Novel insights into the genetically obese (ob/ob) and diabetic (db/db) mice: two sides of the same coin

by Francesco Suriano, Sara Vieira-Silva, Gwen Falony, Martin Roumain, Adrien Paquot, Rudy Pelicaen, Marion Régnier, Nathalie M. Delzenne, Jeroen Raes, Giulio G. Muccioli, Matthias Van Hul, Patrice D. Cani
Published 2021-06-01

Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiom...

by Shi Huang, Shuaiming Jiang, Dongxue Huo, Celeste Allaband, Mehrbod Estaki, Victor Cantu, Pedro Belda-Ferre, Yoshiki Vázquez-Baeza, Qiyun Zhu, Chenchen Ma, Congfa Li, Amir Zarrinpar, Yang-Yu Liu, Rob Knight, Jiachao Zhang
Published 2021-06-01