Structure-based protein function prediction using graph convolutional networks

by Vladimir Gligorijević, P. Douglas Renfrew, Tomasz Kosciolek, Julia Koehler Leman, Daniel Berenberg, Tommi Vatanen, Chris Chandler, Bryn C. Taylor, Ian M. Fisk, Hera Vlamakis, Ramnik J. Xavier, Rob Knight, Kyunghyun Cho, Richard Bonneau
Published 2021-05-01

Characterizing chromatin landscape from aggregate and single-cell genomic assays using flexible duration modeling

by Mariano I. Gabitto, Anders Rasmussen, Orly Wapinski, Kathryn Allaway, Nicholas Carriero, Gordon J. Fishell, Richard Bonneau
Published 2020-02-01

SpikeForest, reproducible web-facing ground-truth validation of automated neural spike sorters

by Jeremy Magland, James J Jun, Elizabeth Lovero, Alexander J Morley, Cole Lincoln Hurwitz, Alessio Paolo Buccino, Samuel Garcia, Alex H Barnett
Published 2020-05-01

CaImAn an open source tool for scalable calcium imaging data analysis

by Andrea Giovannucci, Johannes Friedrich, Pat Gunn, Jérémie Kalfon, Brandon L Brown, Sue Ann Koay, Jiannis Taxidis, Farzaneh Najafi, Jeffrey L Gauthier, Pengcheng Zhou, Baljit S Khakh, David W Tank, Dmitri B Chklovskii, Eftychios A Pnevmatikakis
Published 2019-01-01

Stoichiometric interactions explain spindle dynamics and scaling across 100 million years of nematode evolution

by Reza Farhadifar, Che-Hang Yu, Gunar Fabig, Hai-Yin Wu, David B Stein, Matthew Rockman, Thomas Müller-Reichert, Michael J Shelley, Daniel J Needleman
Published 2020-09-01

NetKet: A machine learning toolkit for many-body quantum systems

by Giuseppe Carleo, Kenny Choo, Damian Hofmann, James E.T. Smith, Tom Westerhout, Fabien Alet, Emily J. Davis, Stavros Efthymiou, Ivan Glasser, Sheng-Hsuan Lin, Marta Mauri, Guglielmo Mazzola, Christian B. Mendl, Evert van Nieuwenburg, Ossian O’Reilly, Hugo Théveniaut, Giacomo Torlai, Filippo Vicentini, Alexander Wietek
Published 2019-07-01

A Bayesian approach to extracting free-energy profiles from cryo-electron microscopy experiments

by Julian Giraldo-Barreto, Sebastian Ortiz, Erik H. Thiede, Karen Palacio-Rodriguez, Bob Carpenter, Alex H. Barnett, Pilar Cossio
Published 2021-07-01

The many behaviors of deformable active droplets

by Y. -N. Young, Michael J. Shelley, David B. Stein
Published 2021-04-01

A single early-in-life macrolide course has lasting effects on murine microbial network topology and immunity

by Victoria E. Ruiz, Thomas Battaglia, Zachary D. Kurtz, Luc Bijnens, Amy Ou, Isak Engstrand, Xuhui Zheng, Tadasu Iizumi, Briana J. Mullins, Christian L. Müller, Ken Cadwell, Richard Bonneau, Guillermo I. Perez-Perez, Martin J. Blaser
Published 2017-09-01

Strongly-interacting ultralight millicharged particles

by Stephon Alexander, Evan McDonough, David N. Spergel
Published 2021-11-01

Fast multipole methods for the evaluation of layer potentials with locally-corrected quadratures

by Leslie Greengard, Michael O'Neil, Manas Rachh, Felipe Vico
Published 2021-03-01

Flexibility in motor timing constrains the topology and dynamics of pattern generator circuits

by Cengiz Pehlevan, Farhan Ali, Bence P. Ölveczky
Published 2018-03-01

Integration of 5G Networks and Internet of Things for Future Smart City

by Bo Rong, Shuai Han, Michel Kadoch, Xi Chen, Antonio Jara
Published 2020-01-01

Fermionic neural-network states for ab-initio electronic structure

by Kenny Choo, Antonio Mezzacapo, Giuseppe Carleo
Published 2020-05-01

Constructing exact representations of quantum many-body systems with deep neural networks

by Giuseppe Carleo, Yusuke Nomura, Masatoshi Imada
Published 2018-12-01

Efficient and accurate extraction of in vivo calcium signals from microendoscopic video data

by Pengcheng Zhou, Shanna L Resendez, Jose Rodriguez-Romaguera, Jessica C Jimenez, Shay Q Neufeld, Andrea Giovannucci, Johannes Friedrich, Eftychios A Pnevmatikakis, Garret D Stuber, Rene Hen, Mazen A Kheirbek, Bernardo L Sabatini, Robert E Kass, Liam Paninski
Published 2018-02-01

SARS-CoV-2 gene content and COVID-19 mutation impact by comparing 44 Sarbecovirus genomes

by Irwin Jungreis, Rachel Sealfon, Manolis Kellis
Published 2021-05-01

Theory of photoinduced ultrafast switching to a spin-orbital ordered hidden phase

by Jiajun Li, Hugo U. R. Strand, Philipp Werner, Martin Eckstein
Published 2018-11-01

Electron hydrodynamics in anisotropic materials

by Georgios Varnavides, Adam S. Jermyn, Polina Anikeeva, Claudia Felser, Prineha Narang
Published 2020-09-01

One-dimensional flat bands in twisted bilayer germanium selenide

by D. M. Kennes, L. Xian, M. Claassen, A. Rubio
Published 2020-02-01