Whole genome sequencing, variant analysis, phylogenetics, and deep sequencing of Zika virus strains

by Susmita Shrivastava, Vinita Puri, Kari A. Dilley, Erica Ngouajio, Jessica Shifflett, Lauren M. Oldfield, Nadia B. Fedorova, Lihui Hu, Torrey Williams, Alan Durbin, Paolo Amedeo, Sujatha Rashid, Reed S. Shabman, Brett E. Pickett
Published 2018-10-01

Structural and functional diversity of the microbial kinome.

by Natarajan Kannan, Susan S Taylor, Yufeng Zhai, J Craig Venter, Gerard Manning
Published 2007-03-01

Fine population structure analysis method for genomes of many

by Xuedong Pan, Yi Wang, Emily H. M. Wong, Amalio Telenti, J. Craig Venter, Li Jin
Published 2017-10-01

Stalking the fourth domain in metagenomic data: searching for, discovering, and interpreting novel, deep branches in marker gene phylogenetic trees.

by Dongying Wu, Martin Wu, Aaron Halpern, Douglas B Rusch, Shibu Yooseph, Marvin Frazier, J Craig Venter, Jonathan A Eisen
Published 2011-03-01

Utilization of defined microbial communities enables effective evaluation of meta-genomic assemblies

by William W. Greenwald, Niels Klitgord, Victor Seguritan, Shibu Yooseph, J. Craig Venter, Chad Garner, Karen E. Nelson, Weizhong Li
Published 2017-04-01

The blood DNA virome in 8,000 humans.

by Ahmed Moustafa, Chao Xie, Ewen Kirkness, William Biggs, Emily Wong, Yaron Turpaz, Kenneth Bloom, Eric Delwart, Karen E Nelson, J Craig Venter, Amalio Telenti
Published 2017-03-01

Rescue of mutant fitness defects using in vitro reconstituted designer transposons in Mycoplasma mycoides

by Bogumil Jacek Karas, Kim eWise, Lijie eSun, J. Craig Venter, John eGlass, Clyde eHutchison, Hamilton eSmith, Yo eSuzuki
Published 2014-07-01

Acetaminophen (Paracetamol) Use Modifies the Sulfation of Sex Hormones

by Isaac V. Cohen, Elizabeth T. Cirulli, Matthew W. Mitchell, Thomas J. Jonsson, James Yu, Naisha Shah, Tim D. Spector, Lining Guo, J. Craig Venter, Amalio Telenti
Published 2018-02-01

Genetic variation in an individual human exome.

by Pauline C Ng, Samuel Levy, Jiaqi Huang, Timothy B Stockwell, Brian P Walenz, Kelvin Li, Nelson Axelrod, Dana A Busam, Robert L Strausberg, J Craig Venter
Published 2008-08-01

Metagenomic exploration of viruses throughout the Indian Ocean.

by Shannon J Williamson, Lisa Zeigler Allen, Hernan A Lorenzi, Douglas W Fadrosh, Daniel Brami, Mathangi Thiagarajan, John P McCrow, Andrey Tovchigrechko, Shibu Yooseph, J Craig Venter
Published 2012-01-01

The Baltic Sea Virome: Diversity and Transcriptional Activity of DNA and RNA Viruses

by Lisa Zeigler Allen, John P. McCrow, Karolina Ininbergs, Christopher L. Dupont, Jonathan H. Badger, Jeffery M. Hoffman, Martin Ekman, Andrew E. Allen, Birgitta Bergman, J. Craig Venter, Joshua Weitz
Published 2017-02-01

Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome.

by Byrappa Venkatesh, Ewen F Kirkness, Yong-Hwee Loh, Aaron L Halpern, Alison P Lee, Justin Johnson, Nidhi Dandona, Lakshmi D Viswanathan, Alice Tay, J Craig Venter, Robert L Strausberg, Sydney Brenner
Published 2007-04-01

The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples.

by Shannon J Williamson, Douglas B Rusch, Shibu Yooseph, Aaron L Halpern, Karla B Heidelberg, John I Glass, Cynthia Andrews-Pfannkoch, Douglas Fadrosh, Christopher S Miller, Granger Sutton, Marvin Frazier, J Craig Venter
Published 2008-01-01

Interplay between the human gut microbiome and host metabolism

by Alessia Visconti, Caroline I. Le Roy, Fabio Rosa, Niccolò Rossi, Tiphaine C. Martin, Robert P. Mohney, Weizhong Li, Emanuele de Rinaldis, Jordana T. Bell, J. Craig Venter, Karen E. Nelson, Tim D. Spector, Mario Falchi
Published 2019-10-01

A metagenomic framework for the study of airborne microbial communities.

by Shibu Yooseph, Cynthia Andrews-Pfannkoch, Aaron Tenney, Jeff McQuaid, Shannon Williamson, Mathangi Thiagarajan, Daniel Brami, Lisa Zeigler-Allen, Jeff Hoffman, Johannes B Goll, Douglas Fadrosh, John Glass, Mark D Adams, Robert Friedman, J Craig Venter
Published 2013-01-01

An unsupervised learning approach to identify novel signatures of health and disease from multimodal data

by Ilan Shomorony, Elizabeth T. Cirulli, Lei Huang, Lori A. Napier, Robyn R. Heister, Michael Hicks, Isaac V. Cohen, Hung-Chun Yu, Christine Leon Swisher, Natalie M. Schenker-Ahmed, Weizhong Li, Karen E. Nelson, Pamila Brar, Andrew M. Kahn, Timothy D. Spector, C. Thomas Caskey, J. Craig Venter, David S. Karow, Ewen F. Kirkness, Naisha Shah
Published 2020-01-01

Maternal carriage of Prevotella during pregnancy associates with protection against food allergy in the offspring

by Peter J. Vuillermin, Martin O’Hely, Fiona Collier, Katrina J. Allen, Mimi L. K. Tang, Leonard C. Harrison, John B. Carlin, Richard Saffery, Sarath Ranganathan, Peter D. Sly, Lawrence Gray, John Molloy, Angela Pezic, Michael Conlon, David Topping, Karen Nelson, Charles R. Mackay, Laurence Macia, Jennifer Koplin, Samantha L. Dawson, Margarita Moreno-Betancur, Anne-Louise Ponsonby, the J. Craig Venter Institute, the BIS Investigator Group
Published 2020-03-01

Functional tradeoffs underpin salinity-driven divergence in microbial community composition.

by Chris L Dupont, John Larsson, Shibu Yooseph, Karolina Ininbergs, Johannes Goll, Johannes Asplund-Samuelsson, John P McCrow, Narin Celepli, Lisa Zeigler Allen, Martin Ekman, Andrew J Lucas, Åke Hagström, Mathangi Thiagarajan, Björn Brindefalk, Alexander R Richter, Anders F Andersson, Aaron Tenney, Daniel Lundin, Andrey Tovchigrechko, Johan A A Nylander, Daniel Brami, Jonathan H Badger, Andrew E Allen, Douglas B Rusch, Jeff Hoffman, Erling Norrby, Robert Friedman, Jarone Pinhassi, J Craig Venter, Birgitta Bergman
Published 2014-01-01

The diploid genome sequence of an individual human.

by Samuel Levy, Granger Sutton, Pauline C Ng, Lars Feuk, Aaron L Halpern, Brian P Walenz, Nelson Axelrod, Jiaqi Huang, Ewen F Kirkness, Gennady Denisov, Yuan Lin, Jeffrey R MacDonald, Andy Wing Chun Pang, Mary Shago, Timothy B Stockwell, Alexia Tsiamouri, Vineet Bafna, Vikas Bansal, Saul A Kravitz, Dana A Busam, Karen Y Beeson, Tina C McIntosh, Karin A Remington, Josep F Abril, John Gill, Jon Borman, Yu-Hui Rogers, Marvin E Frazier, Stephen W Scherer, Robert L Strausberg, J Craig Venter
Published 2007-09-01

The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families.

by Shibu Yooseph, Granger Sutton, Douglas B Rusch, Aaron L Halpern, Shannon J Williamson, Karin Remington, Jonathan A Eisen, Karla B Heidelberg, Gerard Manning, Weizhong Li, Lukasz Jaroszewski, Piotr Cieplak, Christopher S Miller, Huiying Li, Susan T Mashiyama, Marcin P Joachimiak, Christopher van Belle, John-Marc Chandonia, David A Soergel, Yufeng Zhai, Kannan Natarajan, Shaun Lee, Benjamin J Raphael, Vineet Bafna, Robert Friedman, Steven E Brenner, Adam Godzik, David Eisenberg, Jack E Dixon, Susan S Taylor, Robert L Strausberg, Marvin Frazier, J Craig Venter
Published 2007-03-01