Role of N-glycosylation in activation of proMMP-9. A molecular dynamics simulations study.

by Sonu Kumar, Piotr Cieplak
Published 2018-01-01

Caspase cleavage sites in the human proteome: CaspDB, a database of predicted substrates.

by Sonu Kumar, Bram J van Raam, Guy S Salvesen, Piotr Cieplak
Published 2014-01-01

CleavPredict: A Platform for Reasoning about Matrix Metalloproteinases Proteolytic Events.

by Sonu Kumar, Boris I Ratnikov, Marat D Kazanov, Jeffrey W Smith, Piotr Cieplak
Published 2015-01-01

Correction: CleavPredict: A Platform for Reasoning about Matrix Metalloproteinases Proteolytic Events.

by Sonu Kumar, Boris I Ratnikov, Marat D Kazanov, Jeffrey W Smith, Piotr Cieplak
Published 2015-01-01

Quantitative profiling of protease specificity.

by Boris I Ratnikov, Piotr Cieplak, Albert G Remacle, Elise Nguyen, Jeffrey W Smith
Published 2021-02-01

Matrix metalloproteinase proteolysis of the myelin basic protein isoforms is a source of immunogenic peptides in autoimmune multiple sclerosis.

by Sergey A Shiryaev, Alexei Y Savinov, Piotr Cieplak, Boris I Ratnikov, Khatereh Motamedchaboki, Jeffrey W Smith, Alex Y Strongin
Published 2009-01-01

New details of HCV NS3/4A proteinase functionality revealed by a high-throughput cleavage assay.

by Sergey A Shiryaev, Elliot R Thomsen, Piotr Cieplak, Eugene Chudin, Anton V Cheltsov, Mark S Chee, Igor A Kozlov, Alex Y Strongin
Published 2012-01-01

High-resolution analysis and functional mapping of cleavage sites and substrate proteins of furin in the human proteome.

by Sergey A Shiryaev, Andrei V Chernov, Vladislav S Golubkov, Elliot R Thomsen, Eugene Chudin, Mark S Chee, Igor A Kozlov, Alex Y Strongin, Piotr Cieplak
Published 2013-01-01

S-Nitrosylation-Mediated Redox Transcriptional Switch Modulates Neurogenesis and Neuronal Cell Death

by Shu-ichi Okamoto, Tomohiro Nakamura, Piotr Cieplak, Shing Fai Chan, Evgenia Kalashnikova, Lujian Liao, Sofiyan Saleem, Xuemei Han, Arjay Clemente, Anthony Nutter, Sam Sances, Christopher Brechtel, Daniel Haus, Florian Haun, Sara Sanz-Blasco, Xiayu Huang, Hao Li, Jeffrey D. Zaremba, Jiankun Cui, Zezong Gu, Rana Nikzad, Anne Harrop, Scott R. McKercher, Adam Godzik, John R. Yates III, Stuart A. Lipton
Published 2014-07-01

The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families.

by Shibu Yooseph, Granger Sutton, Douglas B Rusch, Aaron L Halpern, Shannon J Williamson, Karin Remington, Jonathan A Eisen, Karla B Heidelberg, Gerard Manning, Weizhong Li, Lukasz Jaroszewski, Piotr Cieplak, Christopher S Miller, Huiying Li, Susan T Mashiyama, Marcin P Joachimiak, Christopher van Belle, John-Marc Chandonia, David A Soergel, Yufeng Zhai, Kannan Natarajan, Shaun Lee, Benjamin J Raphael, Vineet Bafna, Robert Friedman, Steven E Brenner, Adam Godzik, David Eisenberg, Jack E Dixon, Susan S Taylor, Robert L Strausberg, Marvin Frazier, J Craig Venter
Published 2007-03-01