The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific.

by Douglas B Rusch, Aaron L Halpern, Granger Sutton, Karla B Heidelberg, Shannon Williamson, Shibu Yooseph, Dongying Wu, Jonathan A Eisen, Jeff M Hoffman, Karin Remington, Karen Beeson, Bao Tran, Hamilton Smith, Holly Baden-Tillson, Clare Stewart, Joyce Thorpe, Jason Freeman, Cynthia Andrews-Pfannkoch, Joseph E Venter, Kelvin Li, Saul Kravitz, John F Heidelberg, Terry Utterback, Yu-Hui Rogers, Luisa I Falcón, Valeria Souza, Germán Bonilla-Rosso, Luis E Eguiarte, David M Karl, Shubha Sathyendranath, Trevor Platt, Eldredge Bermingham, Victor Gallardo, Giselle Tamayo-Castillo, Michael R Ferrari, Robert L Strausberg, Kenneth Nealson, Robert Friedman, Marvin Frazier, J Craig Venter
Published 2007-03-01

Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus.

by Natalie D Fedorova, Nora Khaldi, Vinita S Joardar, Rama Maiti, Paolo Amedeo, Michael J Anderson, Jonathan Crabtree, Joana C Silva, Jonathan H Badger, Ahmed Albarraq, Sam Angiuoli, Howard Bussey, Paul Bowyer, Peter J Cotty, Paul S Dyer, Amy Egan, Kevin Galens, Claire M Fraser-Liggett, Brian J Haas, Jason M Inman, Richard Kent, Sebastien Lemieux, Iran Malavazi, Joshua Orvis, Terry Roemer, Catherine M Ronning, Jaideep P Sundaram, Granger Sutton, Geoff Turner, J Craig Venter, Owen R White, Brett R Whitty, Phil Youngman, Kenneth H Wolfe, Gustavo H Goldman, Jennifer R Wortman, Bo Jiang, David W Denning, William C Nierman
Published 2008-04-01

Initial genome sequencing of the sugarcane CP 96-1252 complex hybrid [version 1; referees: 2 approved]

by Jason R. Miller, Kari A. Dilley, Derek M. Harkins, Manolito G. Torralba, Kelvin J. Moncera, Karen Beeri, Karrie Goglin, Timothy B. Stockwell, Granger G. Sutton, Reed S. Shabman
Published 2017-05-01

Author Correction: Microbiome disturbance and resilience dynamics of the upper respiratory tract during influenza A virus infection

by Drishti Kaul, Raveen Rathnasinghe, Marcela Ferres, Gene S. Tan, Aldo Barrera, Brett E. Pickett, Barbara A. Methe, Suman R. Das, Isolda Budnik, Rebecca A. Halpin, David Wentworth, Mirco Schmolke, Ignacio Mena, Randy A. Albrecht, Indresh Singh, Karen E. Nelson, Adolfo García-Sastre, Chris L. Dupont, Rafael A. Medina
Published 2020-06-01

Microbiome disturbance and resilience dynamics of the upper respiratory tract during influenza A virus infection

by Drishti Kaul, Raveen Rathnasinghe, Marcela Ferres, Gene S. Tan, Aldo Barrera, Brett E. Pickett, Barbara A. Methe, Suman R. Das, Isolda Budnik, Rebecca A. Halpin, David Wentworth, Mirco Schmolke, Ignacio Mena, Randy A. Albrecht, Indresh Singh, Karen E. Nelson, Adolfo García-Sastre, Chris L. Dupont, Rafael A. Medina
Published 2020-05-01

Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons

by Rebecca D. Hodge, Jeremy A. Miller, Mark Novotny, Brian E. Kalmbach, Jonathan T. Ting, Trygve E. Bakken, Brian D. Aevermann, Eliza R. Barkan, Madeline L. Berkowitz-Cerasano, Charles Cobbs, Francisco Diez-Fuertes, Song-Lin Ding, Jamison McCorrison, Nicholas J. Schork, Soraya I. Shehata, Kimberly A. Smith, Susan M. Sunkin, Danny N. Tran, Pratap Venepally, Anna Marie Yanny, Frank J. Steemers, John W. Phillips, Amy Bernard, Christof Koch, Roger S. Lasken, Richard H. Scheuermann, Ed S. Lein
Published 2020-03-01

Contemporary circulating enterovirus D68 strains have acquired the capacity for viral entry and replication in human neuronal cells

by D. Brown, L. Oldfield, Y. Zhang, R. Scheuermann
Published 2020-12-01

A host subtraction database for virus discovery in human cell line sequencing data [version 3; peer review: 2 approved]

by Jason R. Miller, Kari A. Dilley, Derek M. Harkins, Timothy B. Stockwell, Reed S. Shabman, Granger G. Sutton
Published 2019-05-01

Gross Chromosomal Rearrangements in <i>Kluyveromyces marxianus</i> Revealed by Illumina and Oxford Nanopore Sequencing

by Lin Ding, Harrison D. Macdonald, Hamilton O Smith, Clyde A. Hutchison III, Chuck Merryman, Todd P. Michael, Bradley W. Abramson, Krishna Kannan, Joe Liang, John Gill, Daniel G. Gibson, John I. Glass
Published 2020-09-01

Urethral Catheter Biofilms Reveal Plasticity in Bacterial Composition and Metabolism and Withstand Host Immune Defenses in Hypoxic Environment

by Yanbao Yu, Harinder Singh, Tamara Tsitrin, Shiferaw Bekele, Yi-Han Lin, Patricia Sikorski, Kelvin J. Moncera, Manolito G. Torralba, Lisa Morrow, Randall Wolcott, Karen E. Nelson, Karen E. Nelson, Rembert Pieper
Published 2021-06-01

A draft genome sequence for the Ixodes scapularis cell line, ISE6 [version 1; referees: 2 approved]

by Jason R. Miller, Sergey Koren, Kari A. Dilley, Derek M. Harkins, Timothy B. Stockwell, Reed S. Shabman, Granger G. Sutton
Published 2018-03-01

Cell type discovery and representation in the era of high-content single cell phenotyping

by Trygve Bakken, Lindsay Cowell, Brian D. Aevermann, Mark Novotny, Rebecca Hodge, Jeremy A. Miller, Alexandra Lee, Ivan Chang, Jamison McCorrison, Bali Pulendran, Yu Qian, Nicholas J. Schork, Roger S. Lasken, Ed S. Lein, Richard H. Scheuermann
Published 2017-12-01

Strain Level Streptococcus Colonization Patterns during the First Year of Life

by Meredith S. Wright, Jamison McCorrison, Andres M. Gomez, Erin Beck, Derek Harkins, Jyoti Shankar, Stephanie Mounaud, Edelwisa Segubre-Mercado, Aileen May R. Mojica, Brian Bacay, Susan A. Nzenze, Sheila Z. M. Kimaro, Peter Adrian, Keith P. Klugman, Marilla G. Lucero, Karen E. Nelson, Shabir Madhi, Granger G. Sutton, William C. Nierman, Liliana Losada
Published 2017-09-01

Identifying disease severity associated genetic regions in Dengue virus using computational and machine learning approaches

by Y. Zhang, R. Bhattacharya, R. Scheuermann
Published 2020-12-01

Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom

by Sarah R. Smith, Chris L. Dupont, James K. McCarthy, Jared T. Broddrick, Miroslav Oborník, Aleš Horák, Zoltán Füssy, Jaromír Cihlář, Sabrina Kleessen, Hong Zheng, John P. McCrow, Kim K. Hixson, Wagner L. Araújo, Adriano Nunes-Nesi, Alisdair Fernie, Zoran Nikoloski, Bernhard O. Palsson, Andrew E. Allen
Published 2019-10-01

Genomic epidemiology of carbapenemase-producing Enterobacteriaceae in hospitalised patients in Bangkok, Thailand from 2015 to 2017

by A. Boonyasiri, E. Jauneikaite, L.M. Brinkac, C. Greco, K. Lerdlamyong, T. Tangkoskul, K. Nguyen, V. Thamlikitkul, D.E. Fouts
Published 2020-12-01

Intestinal and hepatic microbiota changes associated with chronic ethanol administration in mice

by Sena Bluemel, Lirui Wang, Claire Kuelbs, Kelvin Moncera, Manolito Torralba, Harinder Singh, Derrick E. Fouts, Bernd Schnabl
Published 2020-05-01

Xylitol and sorbitol effects on the microbiome of saliva and plaque

by Reisha Rafeek, Christine V. F. Carrington, Andres Gomez, Derek Harkins, Manolito Torralba, Claire Kuelbs, Jonas Addae, Ahmed Moustafa, Karen E. Nelson
Published 2019-01-01

Essential metabolism for a minimal cell

by Marian Breuer, Tyler M Earnest, Chuck Merryman, Kim S Wise, Lijie Sun, Michaela R Lynott, Clyde A Hutchison, Hamilton O Smith, John D Lapek, David J Gonzalez, Valérie de Crécy-Lagard, Drago Haas, Andrew D Hanson, Piyush Labhsetwar, John I Glass, Zaida Luthey-Schulten
Published 2019-01-01

Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm

by Jennifer M. Michaud, Luke R. Thompson, Drishti Kaul, Josh L. Espinoza, R. Alexander Richter, Zhenjiang Zech Xu, Christopher Lee, Kevin M. Pham, Charlotte M. Beall, Francesca Malfatti, Farooq Azam, Rob Knight, Michael D. Burkart, Christopher L. Dupont, Kimberly A. Prather
Published 2018-05-01