Fast and exact quantification of motif occurrences in biological sequences

Fast and exact quantification of motif occurrences in biological sequences

Background: Identification of motifs and quantification of their occurrences are important for the study of genetic diseases, gene evolution, transcription sites, and other biological mechanisms. Exact formulae for estimating count distributions of motifs under Markovian assumptions have high comput...

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Bibliographic Details
Main Authors: Boucher, C. (Author), Marini, S. (Author), Prosperi, M. (Author)
Format: Article
Language:English
Published: BioMed Central Ltd 2021
Subjects:
algorithm
Algorithms
Antimicrobial resistances
Arbitrary precision
Bacteria
Bioinformatics
Biological mechanisms
Biological sequences
C++ (programming language)
Data handling
Fast implementation
Iterative methods
Markov model
Motif characterization
Motifs
Open source software
Open systems
Open-source solutions
Orders of magnitude
Probability distribution
software
Software
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