HAVoC, a bioinformatic pipeline for reference-based consensus assembly and lineage assignment for SARS-CoV-2 sequences

HAVoC, a bioinformatic pipeline for reference-based consensus assembly and lineage assignment for SARS-CoV-2 sequences

Background: SARS-CoV-2 related research has increased in importance worldwide since December 2019. Several new variants of SARS-CoV-2 have emerged globally, of which the most notable and concerning currently are the UK variant B.1.1.7, the South African variant B1.351 and the Brazilian variant P.1....

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Bibliographic Details
Main Authors: Kant, R. (Author), Plyusnin, I. (Author), Sironen, T. (Author), Smura, T. (Author), Truong Nguyen, P.T (Author), Vapalahti, O. (Author)
Format: Article
Language:English
Published: BioMed Central Ltd 2021
Subjects:
Bioinformatic tools
Bioinformatics
biology
Brazil
Computational Biology
consensus
Consensus
Coronavirus
COVID-19
Diseases
Fast tool
Finland
Genetic variance
Helsinki
HTTP
human
Humans
Lineage identification
Open source software
Open sources
Pipelines
Reference assembly
SARS-CoV2
SARS-CoV-2
Sequence analysis
Source codes
User manual
Variant detection
Viruses
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