Bit-parallel and SIMD alignment algorithms for biological sequence analysis

High-throughput next-generation sequencing techniques have hugely decreased the cost and increased the speed of sequencing, resulting in an explosion of sequencing data. This motivates the development of high-efficiency sequence alignment algorithms. In this thesis, I present multiple bit-parallel a...

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Bibliographic Details
Main Author: Loving, Joshua
Language:en_US
Published: 2018
Subjects:
Online Access:https://hdl.handle.net/2144/27172