Summary: | I developed a high-throughput fluorescence polarisation (FP) binding assay using fluorescein-IP<sub>3</sub> and purified N-terminal fragments of IP<sub>3</sub>R to examine the thermodynamics of ligand binding to IP<sub>3</sub>R. I demonstrate that at 4°C, equilibrium competition binding using <sup>3</sup>H-IP<sub>3</sub> and the FP assay provided similar estimates of the equilibrium dissociation constants (K<sub>D</sub>) for a variety of ligands. I showed that the IBC alone is sufficient for high-affinity binding of adenophostin A (AdA). Similar amounts of binding energy are diverted into rearranging the SD for IP<sub>3</sub> and AdA, but they are distinguished by their binding enthalpy and entropy changes. I revealed that the enthalpy and entropy changes of the binding of 2-O-modified IP<sub>3</sub> analogues are different, despite their similar free energy changes. These results prompted me to propose a new model to explain partial agonism of IP<sub>3</sub>R. Different cell-surface receptors have been reported to evoke Ca<sup>2+</sup> release from different IP<sub>3</sub>-sensitive Ca<sup>2+</sup> stores. I examined this phenomenon in fura 2-loaded HEK cells. Combined maximal concentrations of ATP and carbachol (CCh) evoked a Ca<sup>2+</sup><sub> </sub>response that was larger than the response to either alone, but smaller than the sum of the responses. In the absence of extracellular Ca<sup>2+</sup>, ATP evoked a Ca<sup>2+</sup> release that was significantly larger than CCh in cells pretreated with CCh, but smaller than the ATP response in naïve cells. In the absence of extracellular Ca<sup>2+</sup>, CCh evoked a Ca<sup>2+</sup> release that was significantly larger than ATP in cells pretreated with ATP, but smaller than the CCh response in naïve cells. These results suggest the existence of discrete agonist-specific Ca<sup>2+</sup>-stores that partially overlap.
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