Microbial phenomics information extractor (MicroPIE): a natural language processing tool for the automated acquisition of prokaryotic phenotypic characters from text sources

Microbial phenomics information extractor (MicroPIE): a natural language processing tool for the automated acquisition of prokaryotic phenotypic characters from text sources

Background: The large-scale analysis of phenomic data (i.e., full phenotypic traits of an organism, such as shape, metabolic substrates, and growth conditions) in microbial bioinformatics has been hampered by the lack of tools to rapidly and accurately extract phenotypic data from existing legacy te...

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Bibliographic Details
Main Authors: Mao, Jin, Moore, Lisa R., Blank, Carrine E., Wu, Elvis Hsin-Hui, Ackerman, Marcia, Ranade, Sonali, Cui, Hong
Other Authors: Univ Arizona, Sch Informat
Language:en
Published: BIOMED CENTRAL LTD 2016
Subjects:
Information extraction
Phenotypic data extraction
Prokaryotic taxonomic descriptions
Microbial phenotypes
Character matrices
Support vector machine
Machine learning
Text mining
Algorithm evaluation
Natural language processing
Online Access:http://hdl.handle.net/10150/622562
http://arizona.openrepository.com/arizona/handle/10150/622562

Internet

http://hdl.handle.net/10150/622562
http://arizona.openrepository.com/arizona/handle/10150/622562

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