Algorithms for Transcriptome Quantification and Reconstruction from RNA-Seq Data

Algorithms for Transcriptome Quantification and Reconstruction from RNA-Seq Data

Massively parallel whole transcriptome sequencing and its ability to generate full transcriptome data at the single transcript level provides a powerful tool with multiple interrelated applications, including transcriptome reconstruction, gene/isoform expression estimation, also known as transcripto...

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Bibliographic Details
Main Author: Mangul, Serghei
Format: Others
Published: Digital Archive @ GSU 2012
Subjects:
Algorithm
transcriptome reconstruction
transcriptome quantification
alternative splicing
RNA-Seq
assembly
isoform expression level
gene expression level
splicing graph
integer programming
expectation maximization
fragment length distribution
Online Access:http://digitalarchive.gsu.edu/cs_diss/71
http://digitalarchive.gsu.edu/cgi/viewcontent.cgi?article=1073&context=cs_diss

Internet

http://digitalarchive.gsu.edu/cs_diss/71
http://digitalarchive.gsu.edu/cgi/viewcontent.cgi?article=1073&context=cs_diss

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